PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35384
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 381aa    MW: 44068.4 Da    PI: 4.3816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35384genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.72.2e-2381491128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                  l pG rF P ++el+++yLk+k++g++++ +e+ i e+d+y   ePw++ +     +  a    ++k++yfF++++kk+a+g+r +r + + g+Wk +
  Ro02_G35384   8 LLPGQRFCPMEDELLMYYLKPKMNGQEVPGKETlICELDLYGDqEPWKIWErfqarR--AndlrKNKDLYFFTQKKKKTAKGSRIRRtVGSGGTWKGQ 103
                  579************************9988877******97549****75244441..1445466799******************5455889**** PP

          NAM  87 gkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                     +ev+  ++++       g kk+ ++   ++ + ++ +W+m e++l
  Ro02_G35384 104 TAPQEVYLLDQNQmptttlLGFKKSYTYK--NEGSVHHGRWIMYEFEL 149
                  *******9866663444447777777776..45555689*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MEDGGPMLLP GQRFCPMEDE LLMYYLKPKM NGQEVPGKET LICELDLYGD QEPWKIWERF  60
QARRANDLRK NKDLYFFTQK KKKTAKGSRI RRTVGSGGTW KGQTAPQEVY LLDQNQMPTT  120
TLLGFKKSYT YKNEGSVHHG RWIMYEFELD KSQILHKKQV NKNDYVLCLL RKNDELPTKK  180
RKKQQEEEML GDFVQDDDDE DNSSNIDPAF LLEEPQEKRQ RVMPRSDDVA PPPFDLAEIE  240
QWYDQQFLQP EADQEAGATP VEAGPVTSQV DQNWGLQQFE AEPQQEEENL GQQSHIPTFA  300
PNEIMGSLDF LPDQNLVQQM GGEVDVYGGN LSNLMVGENW PMSFVEELMN DEQQNTMQVG  360
GDWNVKTTLY ELKNLHLDAN I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.18e-18NAC family protein