PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35106

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 400aa MW: 43737.1 Da PI: 8.4131

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35106	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ro02_G35106 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MFPSVAAMSN STSLSTEEAA SVSSGSRLPD HFACLNSLSV STITSSPQDH QQPQKIKKKR 60 SLPGNPDPDA EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSSK 120 DLIRKRAYMR FIQRILVLSL RESMKDSFIT HRAFCDALAE ESARISASQL AIATSTTNHI 180 TPQISLFPFP NHPHFTNPPP LPFTTLTPWD PPQNPNPNTT HNPLHHHIKP EETHHHFPLN 240 PPLFQDTHKG LITSPFQNLH VGTQPSTNVA TSAHLSATAL LQKAATIGAS AAAQQQTQSA 300 GLAEFGTAEY LGGFTSGDIA TWQKTDRLTR DFLGLTSADG NGCDHGNGAV NVVKGMLTYA 360 GGVEYQSYHD QPLRGHHALL KPQGFGFAET TTASETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MFPSVAAMSN STSLSTEEAA SVSSGSRLPD HFACLNSLSV STITSSPQDH QQPQKIKKKR  60
SLPGNPDPDA EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSSK  120
DLIRKRAYMR FIQRILVLSL RESMKDSFIT HRAFCDALAE ESARISASQL AIATSTTNHI  180
TPQISLFPFP NHPHFTNPPP LPFTTLTPWD PPQNPNPNTT HNPLHHHIKP EETHHHFPLN  240
PPLFQDTHKG LITSPFQNLH VGTQPSTNVA TSAHLSATAL LQKAATIGAS AAAQQQTQSA  300
GLAEFGTAEY LGGFTSGDIA TWQKTDRLTR DFLGLTSADG NGCDHGNGAV NVVKGMLTYA  360
GGVEYQSYHD QPLRGHHALL KPQGFGFAET TTASETWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-42	C2H2 family protein