PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35087
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 302aa    MW: 34494.3 Da    PI: 6.3342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35087genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-051539123
                 EEETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                 +kCp C k ++ k++L  H+++  H
  Ro02_G35087 15 HKCPACYKQYKKKEHLIEHMKVayH 39
                 79******************97666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDSEPDLQKT TTARHKCPAC YKQYKKKEHL IEHMKVAYHS VHDPRCGVCK KHCKSFESLR  60
EHLTGPLAKA NCMKIFSEQG CDLCLKLFDS PTSLSQHREM CLLSAPAPVG TVTIPCAESQ  120
SYMNLSGENH FDNRPEAISM DCEMVGGGSD GSLDLCARVC LTDEDENILF HTYVRPQISI  180
TNYRLDGGKA KLLVGHDLEH DLDCMGMYYP EQLLRYDIQS GMHDPYEDCV AAMRLYKRFR  240
ALDHQKEGID SSLAMKYAND IHGSFDSWTT DKLEKMTPDE LYEMSRPNYK CWCLDRRQAL  300
QP