PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G35068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 167aa MW: 17565.8 Da PI: 6.5009 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.5 | 2.3e-08 | 50 | 68 | 9 | 27 |
GGGTS--TTTTT-SS-SSS CS zf-CCCH 9 fartGtCkyGdrCkFaHgp 27 ++++G+Ck+G++CkF H++ Ro02_G35068 50 HLQNGHCKFGSSCKFDHPM 68 5799*************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MAAQITSGKI IVECDSEVLV NLVENEVDTY HPLAYVLQIL LTMGATLYIH LQNGHCKFGS 60 SCKFDHPMGT MRYSPSASSL DMPVAPYPVG SLLGTLAPSS SSSELRPELI SARIPSSGNP 120 SSSSVGLIFS QSGGSVSLSD VQLSSQTSVP ISSSRSTRQG GEVRRSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 4e-18 | C3H family protein |