PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35014

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 143aa MW: 16287.7 Da PI: 9.4644

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35014	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.7	9.9e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ r+vt+skR+ngi+KKA E+ vLCda+v++ii ss+g+++ey+s Ro02_G35014 9 KRIENSNSRNVTYSKRKNGIIKKAMEITVLCDAKVSLIINSSSGRMHEYCS 59 79***********************************************96 PP
2	K-box	74.5	2.9e-25	72	142	1	71
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 y+++sgk+l++ak+e+l++e++++kk ++ +q e+Rhl+Ged++sL++ +L+ Le++Le++l +iR+k+ + Ro02_G35014 72 YHSQSGKKLWDAKHENLSNEVDRVKKDNDGMQIELRHLKGEDITSLNHMDLMALEEALENGLASIRDKQAK 142 78999***************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MGRGKIEIKR IENSNSRNVT YSKRKNGIIK KAMEITVLCD AKVSLIINSS SGRMHEYCSG 60 PQETLMKILD KYHSQSGKKL WDAKHENLSN EVDRVKKDND GMQIELRHLK GEDITSLNHM 120 DLMALEEALE NGLASIRDKQ AKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	6e-66	MIKC_MADS family protein