PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G35010

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 435aa MW: 48354.6 Da PI: 5.9729

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G35010	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	373	406	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Ro02_G35010 373 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 406 469*****************************87 PP
2	ELK	28.8	2.8e-10	327	348	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Ro02_G35010 327 ELKHELKQGYKEKIVDIREEIL 348 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MAYQHHLSGD LPLHHFTDQT QQQQNQSFLT DQPDPNSKST EPHHPFQAAP NWLNTALLRT 60 QYATTTSAAD TNNAAATNFL NLHTASDSNA ASNQWLSRPI LQRNHSDVID DVPAGAGDSM 120 IAGDMSHDSA DMKNDASLNN KSEGGAVVEG GGGDGVINWQ NARHKAEILA HPLYEPLLSA 180 HVACLRIATP VDQLPRIDAQ LAQSQNVLAK YSGLGHGMVG DDKELDQFMR HYVLLLCSFK 240 EQLQQHVRVH AMEAVMACWE IEQSLQSLTG VSPGEGTGAT MSDDDDEQVD SDANLFDGSM 300 DAHDSMGFGP LIPTESERSL MERVRQELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT 360 TSVLKAWWQS HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSTSTVLKS 420 KRKSNAGDNS GDRFI

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MAYQHHLSGD LPLHHFTDQT QQQQNQSFLT DQPDPNSKST EPHHPFQAAP NWLNTALLRT  60
QYATTTSAAD TNNAAATNFL NLHTASDSNA ASNQWLSRPI LQRNHSDVID DVPAGAGDSM  120
IAGDMSHDSA DMKNDASLNN KSEGGAVVEG GGGDGVINWQ NARHKAEILA HPLYEPLLSA  180
HVACLRIATP VDQLPRIDAQ LAQSQNVLAK YSGLGHGMVG DDKELDQFMR HYVLLLCSFK  240
EQLQQHVRVH AMEAVMACWE IEQSLQSLTG VSPGEGTGAT MSDDDDEQVD SDANLFDGSM  300
DAHDSMGFGP LIPTESERSL MERVRQELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT  360
TSVLKAWWQS HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSTSTVLKS  420
KRKSNAGDNS GDRFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	0.0	TALE family protein