PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G34938
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 267aa    MW: 29919.2 Da    PI: 8.9692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G34938genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-15120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ ++++++++lG+g+Wk I++   ++R++ q+ s+ qky
      Ro02_G34938 120 AWSEEEHRRFLEGIEKLGKGDWKGISKNYVTTRSPTQIASHAQKY 164
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MARTCSKCGK MGHNSRTCSS STTQYYWSQL LKMKERGGNS FRLFGVQLDH HDLSSSSSSS  60
FSQISSNMIN RLERWSMDFL SSSTSPRLTS CLSGYEANIG MNGYRYQGGL QETNFNKGVA  120
WSEEEHRRFL EGIEKLGKGD WKGISKNYVT TRSPTQIASH AQKYFLRLQN ATTVTTTIDN  180
LDPNRKRCRR PSLFDVGKDQ PISARELIDI NTYNPNVEAS VNNPYECSPA DHHSKPLRFD  240
VNSKNSSFQS AAAEGGEPDL ELKLAAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-33MYB_related family protein