PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G34836

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 26599.1 Da PI: 9.3551

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G34836	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.6	3.9e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrngi+KKA+EL vLCda+v+++++ss+gkl+ey+s Ro02_G34836 9 KRIENVTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLLMVSSSGKLHEYIS 59 79***********************************************86 PP
2	K-box	81.8	1.6e-27	71	159	1	89
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 yqk + ++l+++++e +q++l+kL + ++nL+r++Rh++Ge+L++L + eLq+Le+++e++++ iR +K++++++qi + ++k +++ + Ro02_G34836 71 YQKLQATDLWKSHYEAMQENLKKLTEINKNLKRQIRHRVGECLNDLRFDELQSLEKEMESAVQIIRHHKDKVITTQIATKKRKIRNATQ 159 8999*******************************************************************************998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MARGKIQIKR IENVTNRQVT YSKRRNGIFK KAHELTVLCD AKVSLLMVSS SGKLHEYISP 60 STTTKQVYDE YQKLQATDLW KSHYEAMQEN LKKLTEINKN LKRQIRHRVG ECLNDLRFDE 120 LQSLEKEMES AVQIIRHHKD KVITTQIATK KRKIRNATQC YRRFYEFDAM DDPQYGLVEN 180 GGDYYDSVIG YSSNEDPHNI FDLRLQTSHH PNLHHHGGGS DLTTYALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-79	MIKC_MADS family protein