PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G34805
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 355aa    MW: 38949.8 Da    PI: 7.4363
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G34805genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY901.9e-28161220159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh+
  Ro02_G34805 161 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApTCPVKKKVQKSAENPCLLVATYEGEHNHN 220
                  58***************************99****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MDSSKWVNTS LGLNLVPNHS PHALEDEDQP PVSTSSMTAA AASAVGAGGS VLLGEELNRI  60
SLENKKLTEM LTVLCENYNA LETHVKELAS ENELILANNC LIKKRKAPPL GFTRNTTSTT  120
AETSSSDEES YKRPMEMSSN INLKISRVYV PTDVSDTRLI VKDGYQWRKY GQKVTRDNPS  180
PRAYYKCSFA PTCPVKKKVQ KSAENPCLLV ATYEGEHNHN HPAQPQVITI DHRQSPNLIT  240
TTSIPLILND HSSNILASKR SSSSPTTMSM SSSSDHNSLM EPGSSCGHKP NQVIEAAADH  300
HPQYDHKATN FQQLLVQQMA SSLTKDPNFT TALTAAIAAG RFNILDHPHP PIPKW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-61WRKY family protein