PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G27703

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 595aa MW: 67307.9 Da PI: 4.5811

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G27703	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.3	2.1e-51	18	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPtdeelv +yLk+k+ +k+l+l +vi+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+ +++ + Ro02_G27703 18 QPGFRFHPTDEELVLYYLKRKICKKRLKL-NVIAETDVYKWDPEELPglSLLKTGDRQWFFFSPRDRKYPNGGRSNRATRQGYWKATGKDRIITC-YT 113 69*************************.99***********644788899***********************************.89 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vglkktLvfykgrap+ge+tdWvmhey+l Ro02_G27703 114 RSVGLKKTLVFYKGRAPTGERTDWVMHEYTL 144 99*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MVSENDVVTA LCDGQFWQPG FRFHPTDEEL VLYYLKRKIC KKRLKLNVIA ETDVYKWDPE 60 ELPGLSLLKT GDRQWFFFSP RDRKYPNGGR SNRATRQGYW KATGKDRIIT CYTRSVGLKK 120 TLVFYKGRAP TGERTDWVMH EYTLDEEELK RCQNVQEYYA LYKVFKKSGP GPKNGEQYGA 180 PFREEDWADD ECLVINSSAD REISVKQVGE VTAGYNVKHN GEIPLKQVEE ITSNDYVKVN 240 SEVHSALDDL EEFMKQIADD AVDGLPQFND YAHTLTQVVS EEETQSTMVD LYSSEVICPQ 300 PMRTIDPICQ QGNTHASFDF TQSQMQMYEA SEVTSASDIH QQEPPIPILR EEDFLEMDDL 360 LGPEPTISNT GNSEDNLQFD ELDGFDLFQD AAMFFNDMGP IEQGTVSHQF MNSMGVNIVN 420 QFDYQIRPAA QNQNNHLLNP ESTQINDQLW AQNERRDHCT SAESNQGSLP HLTSGVLYES 480 SNHPTQANQN QSSNEAAGVT SQFSSALWSF VESIPTTPAS ASENALVNRA FERMSSFSRM 540 RIIARSTNVT AGNGSETMRG ARKRGFFFLP VLVALCAIFC VLMATLRQWG GCISS

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MVSENDVVTA LCDGQFWQPG FRFHPTDEEL VLYYLKRKIC KKRLKLNVIA ETDVYKWDPE  60
ELPGLSLLKT GDRQWFFFSP RDRKYPNGGR SNRATRQGYW KATGKDRIIT CYTRSVGLKK  120
TLVFYKGRAP TGERTDWVMH EYTLDEEELK RCQNVQEYYA LYKVFKKSGP GPKNGEQYGA  180
PFREEDWADD ECLVINSSAD REISVKQVGE VTAGYNVKHN GEIPLKQVEE ITSNDYVKVN  240
SEVHSALDDL EEFMKQIADD AVDGLPQFND YAHTLTQVVS EEETQSTMVD LYSSEVICPQ  300
PMRTIDPICQ QGNTHASFDF TQSQMQMYEA SEVTSASDIH QQEPPIPILR EEDFLEMDDL  360
LGPEPTISNT GNSEDNLQFD ELDGFDLFQD AAMFFNDMGP IEQGTVSHQF MNSMGVNIVN  420
QFDYQIRPAA QNQNNHLLNP ESTQINDQLW AQNERRDHCT SAESNQGSLP HLTSGVLYES  480
SNHPTQANQN QSSNEAAGVT SQFSSALWSF VESIPTTPAS ASENALVNRA FERMSSFSRM  540
RIIARSTNVT AGNGSETMRG ARKRGFFFLP VLVALCAIFC VLMATLRQWG GCISS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	45	KRKICKKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-150	NAC family protein