PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G24103

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 271aa MW: 30720.6 Da PI: 9.8483

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G24103	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79	3.3e-25	66	116	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g +KKAeELS+LCda++a+++fs+tgkl+ ys+ Ro02_G24103 66 KKIDNTAARQVTFSKRRRGFFKKAEELSTLCDADIALMVFSNTGKLFHYSN 116 68***********************************************85 PP
2	K-box	40.7	1e-14	148	228	17	97
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + a L k+i + +e+R+++Ge++++L+l++L+qLe+ + ++lk++ ++K e +l++i+ l+ k +l eenk+L+++ Ro02_G24103 148 ESSSCAMLSKQIAEKTHELRQIMGEEIQELDLQQLKQLEKLVASGLKRVTDTKGEKFLNEINFLKWKRARLMEENKQLKQM 228 5666788999999999**************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MADDVQSLLS HKRNISCCFL ELARALSGAL AGRSVNVFKL FFFLLLLARS ISEVLVMMTR 60 KKIEIKKIDN TAARQVTFSK RRRGFFKKAE ELSTLCDADI ALMVFSNTGK LFHYSNSTSS 120 VEQLIKRRSL YSEKLDKLNQ PSLEPQLESS SCAMLSKQIA EKTHELRQIM GEEIQELDLQ 180 QLKQLEKLVA SGLKRVTDTK GEKFLNEINF LKWKRARLME ENKQLKQMAR TSRVQTVLES 240 SAPDVCSSSA DPPQDHDSSD TSLKLGLPFP N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	9e-58	MIKC_MADS family protein