PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G23029

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 1624aa MW: 177950 Da PI: 4.3355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G23029	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	1600	1622	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + Cr ++++G+Ck G++C + H+ Ro02_G23029 1600 GRVCR-YYESGHCKKGASCDYLHP 1622 57899.8999*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1624 aa Download sequence
MAAEAEREDV EREREEVGAE REGVEVNREE VQGRREEVGD DGEKTDEVGG VIEDVKVDRE 60 EVQVEKEEVE LERAEVELER EEVELEREEV ELERDEVELD REEVGEERKE AEEDREEAED 120 EQQEEEKAEE QRHEGNVMDM VDETIETEAE AERVEGGHGP DVKDMVDQTF ETTDAVEEGK 180 GDEAEVHEAN VADREEGKEA AVEESEAIVT DMVDETIETE AMEEGKEAAE EGQEANVIVT 240 DMVDEIIGTT EAVEEGKVSE AEGHEANVKD MVDETIETEV AGEEGQEAEV EGREANATIE 300 TDAAVEEGQE AEAEGDEWNV TAKDMVDETI ETEVSGEEGQ EAEAEGHELN GTVTGMIDEA 360 IETTEAVEEA DVGDDVMEET TEAEETEAAE EEAEEMEADE TEAAEEEEAE ETNTACVGGK 420 RKRGKYSKAA SEKVLSKKKE EDVCFICFDG GELVLCDRRG CPKAYHPSCV NRDEAFFRAK 480 GRWNCGWHLC SNCEKNAQYM CYTCTFSLCK ACTKDAVILC VKGNKGFCET CMKTVMMIEK 540 NEHGNKDKDA VDFDDKSSWE YLFKDYWIDL KEKLSLTLND LTLAKNPWKG SAGHANKHGS 600 HEEPYDANND GGSDSDNSEN LDLTNSKRRK SKKRLKTRAK GKNSSSPATG SGGRSADDST 660 KWASKELLEF VMHMRNGDSS ALSQFDVQAL LLEYIKRNKL RDPRRKSQII CDLRLQSLFG 720 KPRVGHFEML KLLESHFLMK EDSQVDDLQG SVVDTEGNQL EAEGNSDTPA KASKDKKRKR 780 KKGEPQSNVE DFAAIDIHNI SLIYLRRNLV EDLLEDMDNF QDKVAGSFVR IRISGSEIVT 840 IDIISNQEFT EDECKRLRQS IKCGLINRLT VGDVQEKAVV LQPVRVKDWL ETETVRLQHL 900 RDRASEKGRR KEYPYRFEEC VEKLQLLKTP EERQRRLEET LEIHADPNMD PSYESEEDED 960 EGGDKRQESY TRPTGSGFGR KGREPISPRR GASSLNDSWS GARNFSNMNR DFSRNMSGKG 1020 MFNKAENTTG AGEILNDTWG QGRETLQTNQ WENKQNISSS ETGSRSTQSV GPSEASPAGA 1080 SENRVAPLSA GVAQSVSNMN ETEKIWHYQD PSGKVQGPFS MIQLRKWNNT GYFPPNLRVW 1140 KNTENQEDSI LVTDALAGKF QKDSSIPKAQ MVHDSHLTPA SSGKPQGAQL QQSSESQSGG 1200 VGWGSHNEIN SSTGRGTPSS VEVPKYSADA WGTTNFPSPT PSQTPISAAK RQAYENNWSP 1260 SPGGNGVLQS PAVLTPDSAV RVAGNDRSSS LPGTFQMHGQ LTVSGPVLAN ASMKPVPDVQ 1320 NIVSNLQNLV QSVSSRTTAS DTQAWGSGTV PGSESQPWGG APSQKIEPNN ATTVPAQHPA 1380 HGYWANAPPT NNGTTSINTG NSAGNFPAQG FSGVPNSDAW RPPVPSNQSY IQPPAQPQVP 1440 WGLSVSDNQS AVPRMGQESQ NAGWVPVAGN PNMSWGGPVP GNTNINWVAP SQGPGWTASG 1500 QGPVRGNAVP SWAPPGQGPP SVSANPGWAP PGQGPALGNA NSGWAAPTAN QTQNGDRFSN 1560 QRDRSSHGGD SGFGGGKPWN RQPSFGGGGG GGSTRPPLKG RVCRYYESGH CKKGASCDYL 1620 HPDH

Sequence ? help Back to Top

Protein Sequence Length: 1624 aa Download sequence

MAAEAEREDV EREREEVGAE REGVEVNREE VQGRREEVGD DGEKTDEVGG VIEDVKVDRE  60
EVQVEKEEVE LERAEVELER EEVELEREEV ELERDEVELD REEVGEERKE AEEDREEAED  120
EQQEEEKAEE QRHEGNVMDM VDETIETEAE AERVEGGHGP DVKDMVDQTF ETTDAVEEGK  180
GDEAEVHEAN VADREEGKEA AVEESEAIVT DMVDETIETE AMEEGKEAAE EGQEANVIVT  240
DMVDEIIGTT EAVEEGKVSE AEGHEANVKD MVDETIETEV AGEEGQEAEV EGREANATIE  300
TDAAVEEGQE AEAEGDEWNV TAKDMVDETI ETEVSGEEGQ EAEAEGHELN GTVTGMIDEA  360
IETTEAVEEA DVGDDVMEET TEAEETEAAE EEAEEMEADE TEAAEEEEAE ETNTACVGGK  420
RKRGKYSKAA SEKVLSKKKE EDVCFICFDG GELVLCDRRG CPKAYHPSCV NRDEAFFRAK  480
GRWNCGWHLC SNCEKNAQYM CYTCTFSLCK ACTKDAVILC VKGNKGFCET CMKTVMMIEK  540
NEHGNKDKDA VDFDDKSSWE YLFKDYWIDL KEKLSLTLND LTLAKNPWKG SAGHANKHGS  600
HEEPYDANND GGSDSDNSEN LDLTNSKRRK SKKRLKTRAK GKNSSSPATG SGGRSADDST  660
KWASKELLEF VMHMRNGDSS ALSQFDVQAL LLEYIKRNKL RDPRRKSQII CDLRLQSLFG  720
KPRVGHFEML KLLESHFLMK EDSQVDDLQG SVVDTEGNQL EAEGNSDTPA KASKDKKRKR  780
KKGEPQSNVE DFAAIDIHNI SLIYLRRNLV EDLLEDMDNF QDKVAGSFVR IRISGSEIVT  840
IDIISNQEFT EDECKRLRQS IKCGLINRLT VGDVQEKAVV LQPVRVKDWL ETETVRLQHL  900
RDRASEKGRR KEYPYRFEEC VEKLQLLKTP EERQRRLEET LEIHADPNMD PSYESEEDED  960
EGGDKRQESY TRPTGSGFGR KGREPISPRR GASSLNDSWS GARNFSNMNR DFSRNMSGKG  1020
MFNKAENTTG AGEILNDTWG QGRETLQTNQ WENKQNISSS ETGSRSTQSV GPSEASPAGA  1080
SENRVAPLSA GVAQSVSNMN ETEKIWHYQD PSGKVQGPFS MIQLRKWNNT GYFPPNLRVW  1140
KNTENQEDSI LVTDALAGKF QKDSSIPKAQ MVHDSHLTPA SSGKPQGAQL QQSSESQSGG  1200
VGWGSHNEIN SSTGRGTPSS VEVPKYSADA WGTTNFPSPT PSQTPISAAK RQAYENNWSP  1260
SPGGNGVLQS PAVLTPDSAV RVAGNDRSSS LPGTFQMHGQ LTVSGPVLAN ASMKPVPDVQ  1320
NIVSNLQNLV QSVSSRTTAS DTQAWGSGTV PGSESQPWGG APSQKIEPNN ATTVPAQHPA  1380
HGYWANAPPT NNGTTSINTG NSAGNFPAQG FSGVPNSDAW RPPVPSNQSY IQPPAQPQVP  1440
WGLSVSDNQS AVPRMGQESQ NAGWVPVAGN PNMSWGGPVP GNTNINWVAP SQGPGWTASG  1500
QGPVRGNAVP SWAPPGQGPP SVSANPGWAP PGQGPALGNA NSGWAAPTAN QTQNGDRFSN  1560
QRDRSSHGGD SGFGGGKPWN RQPSFGGGGG GGSTRPPLKG RVCRYYESGH CKKGASCDYL  1620
HPDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	776	781	KKRKRK
2	776	782	KKRKRKK
3	778	782	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein