PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G22771
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 153aa    MW: 17339.1 Da    PI: 6.8013
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G22771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-202375156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++y+G+r+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+ +++g+
  Ro02_G22771 23 TRYRGIRRRP-WGKYAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNFRGH 75
                 68********.**********98887..*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MEGKRAESNE QKTKQPAKVR DQTRYRGIRR RPWGKYAAEI RDPSRNGARL WLGTFETAEE  60
AARAYDRAAF NFRGHLAILN FPNEYQYHNP STSSYVASSN SVCSLSSTSS DSFSSSAAAA  120
DVGMHFGNEE GQVIEFEYLD NMVLEELLEE RKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-32ERF family protein