PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G21864
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 358aa    MW: 40544.4 Da    PI: 9.4433
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G21864genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-31259854128
          NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ewyfFs++d+ky+tg+r+nrat++g+Wka+g+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrl
  Ro02_G21864  25 PQNEWYFFSHKDRKYPTGSRTNRATNAGFWKAKGRDKCIRN-TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRL 98 
                  467*************************************9.8999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MLIILKVKRD NFVYVVERCR IGSTPQNEWY FFSHKDRKYP TGSRTNRATN AGFWKAKGRD  60
KCIRNTYKKI GMRKTLVFYR GRAPHGQKTD WIMHEYRLGA LKMAMILKET YLLVFKKKNL  120
FKVNNEGGSS SMNSSDHHHQ QLTMSTNQLQ ARSFMHAHSS RSDTGTNQYL LSQQAFELNR  180
PHDHDQDQDQ LPPSLHYAHL NLQPPPQYSL FHSQALNIPI SSHKTLAAYN DYSSLPSDSS  240
PGHGMVKQLM TKPRDCESAG SESLRYQACE PGLEVNGSTC EPNQQAMVNA GGRSSDDQGM  300
SEWAMLDRLV TSHLGNEDST SKAAGARYDQ DGSGSSTVNQ INQQLPLRGE MDFWGYAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-80NAC family protein