PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G21460

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 364aa MW: 40049.6 Da PI: 6.2535

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G21460	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	131	177	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f++L llP++ p K +K++i+ +Av YIk L+ Ro02_G21460 131 HIYTERERRKKMRNMFANLHALLPQL---P-SKADKSTIVDEAVSYIKRLE 177 7778*******************6...3.8**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSEPEARGGG SDGVLWENQS WANLSNSTDN FLVNSNSENS AGGGDEGEDK VGEKETEIME 60 TEDQEQPKIE PRAPAPVKKT PAKKRGGRGG GGGGKKNNGK ATKGKGKASS DEVVKEGKGG 120 SGDSEDDHEL HIYTERERRK KMRNMFANLH ALLPQLPSKA DKSTIVDEAV SYIKRLEINL 180 QSLQQQKMER MRSHPGSTMV NYNPSSILIN PQNVPYDSRD PFLATHASSS NLATASITTA 240 NGFNINPNFN PLNNSLSTNS LSTEPVVFDT WTSANVVLNM CGDEAQISVC TPKKPGIFSQ 300 ICYILEKYRL VVVTAHINSD FHRSMYMIQA QASRALDNHF LEMFPAEEIF KQAVNEIHLW 360 VSNY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSEPEARGGG SDGVLWENQS WANLSNSTDN FLVNSNSENS AGGGDEGEDK VGEKETEIME  60
TEDQEQPKIE PRAPAPVKKT PAKKRGGRGG GGGGKKNNGK ATKGKGKASS DEVVKEGKGG  120
SGDSEDDHEL HIYTERERRK KMRNMFANLH ALLPQLPSKA DKSTIVDEAV SYIKRLEINL  180
QSLQQQKMER MRSHPGSTMV NYNPSSILIN PQNVPYDSRD PFLATHASSS NLATASITTA  240
NGFNINPNFN PLNNSLSTNS LSTEPVVFDT WTSANVVLNM CGDEAQISVC TPKKPGIFSQ  300
ICYILEKYRL VVVTAHINSD FHRSMYMIQA QASRALDNHF LEMFPAEEIF KQAVNEIHLW  360
VSNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	95	RGGRGGGGGGK
2	86	94	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-49	bHLH family protein