PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G19660

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 452aa MW: 52240.7 Da PI: 4.4689

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G19660	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77	4.3e-24	11	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp Gf+F Pt++el+ +yL +kv gk+++ ++ ++e ++y+++P dL ++ ++++++yfF++ +k + +g++ r++ sg+Wk + +v Ro02_G19660 11 LPSGFKFLPTNQELLGYYLLNKVCGKPFKYDSRvMNEYNLYEIDPYDLWIkfggpRL-NQSEDLYFFTQLKKVSDNGTNVARKAGSGTWKGETSGVKV 107 699**********************8886554999*******742454433.256789**********************99999999 PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k++ g k + + +++ ++ +W+m ey+l Ro02_G19660 108 YDSkdKKNILGSWKRFHYE--PTQRNQNGSWIMIEYKL 143 9984444557777777665..55555799*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MDPSCVPVLN LPSGFKFLPT NQELLGYYLL NKVCGKPFKY DSRVMNEYNL YEIDPYDLWI 60 KFGGPRLNQS EDLYFFTQLK KVSDNGTNVA RKAGSGTWKG ETSGVKVYDS KDKKNILGSW 120 KRFHYEPTQR NQNGSWIMIE YKLDDSLIPK SCRDRDLVLC RIGKDRKRKS SENQMNDTPQ 180 SSHSKVARVD KHESYVMSRH ENHILNGDTN LLASFTQFLA SDEEQQQLEP NKRTFEEQQL 240 QQQDPQLLPS PSYYFHEQQQ LLDDDLLVSS HHDDFRRVET YESMNIVQPN PNALISTDQP 300 NRLDIPPVLY VSTFDDFFTT DQLLGTDSEA LVELADNEEM RITDQAQGIS NIVELADTSK 360 DVLNFSLLDE NVFSHSKLDD NVFNVTNPEQ KNDDIAAVVD ESQFDDDSWL ENSIMDDNQS 420 DHNRDAPDSQ PSQMWYKESI QTEEKTVYSK KK

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MDPSCVPVLN LPSGFKFLPT NQELLGYYLL NKVCGKPFKY DSRVMNEYNL YEIDPYDLWI  60
KFGGPRLNQS EDLYFFTQLK KVSDNGTNVA RKAGSGTWKG ETSGVKVYDS KDKKNILGSW  120
KRFHYEPTQR NQNGSWIMIE YKLDDSLIPK SCRDRDLVLC RIGKDRKRKS SENQMNDTPQ  180
SSHSKVARVD KHESYVMSRH ENHILNGDTN LLASFTQFLA SDEEQQQLEP NKRTFEEQQL  240
QQQDPQLLPS PSYYFHEQQQ LLDDDLLVSS HHDDFRRVET YESMNIVQPN PNALISTDQP  300
NRLDIPPVLY VSTFDDFFTT DQLLGTDSEA LVELADNEEM RITDQAQGIS NIVELADTSK  360
DVLNFSLLDE NVFSHSKLDD NVFNVTNPEQ KNDDIAAVVD ESQFDDDSWL ENSIMDDNQS  420
DHNRDAPDSQ PSQMWYKESI QTEEKTVYSK KK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-18	NAC family protein