PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G18470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25248.3 Da PI: 7.8306 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.9 | 2e-39 | 41 | 142 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l++ela++ Ro02_G18470 41 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLQHIPLNRRRDAIVTISYEAQARLSDPVYGCVSTILALQQQVASLQTELAMV 138 7***********************9989*********************************************************************9 PP DUF260 98 keel 101 +++l Ro02_G18470 139 QTQL 142 9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MADEPQGKHH GTSSRKATLG CGKKRTEVDH RESSSSAASA PCGACKFLRR KCISGCIFAP 60 HFGSDQGAAR FAAVHKVFGA SNVSKLLQHI PLNRRRDAIV TISYEAQARL SDPVYGCVST 120 ILALQQQVAS LQTELAMVQT QLINSRFAFA NALQSSQQQQ PQNMALLQPA YSNNSSASTN 180 LINMSSFTSN FHDLASETAP CSHSLVPLML SRPSQDEEED EEESLVPHVQ FR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-72 | LBD family protein |