PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G17700

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 625aa MW: 69639.9 Da PI: 6.4753

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G17700	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.2	5.2e-29	71	154	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e gf+rs+k+Ckek+en+ k+++++keg+ +++ + +t+++fdql+ Ro02_G17700 71 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKS--DGKTYRFFDQLQ 154 8******************************************************************964..5557****98 PP
2	trihelix	102.7	2.7e-32	444	528	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li++r++m+++++++ k+plWee+s +m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ Ro02_G17700 444 RWPRVEVHSLIKLRTSMDSKYQENGPKGPLWEEISGAMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLD 528 8*******************************************************************8.99*******987 PP

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence
MLGDLGSSSD AATATATAMA AEPFRAREGG GGDGGVGSNS GEEDRNNYSR GGSGGGGGGE 60 EFGDKSFGGN RWPRQETLAL LKIRSDMDVA FRDASVKGPL WDEVSRKLAE LGFHRSAKKC 120 KEKFENVYKY HRRTKEGRTG KSDGKTYRFF DQLQALENQP PTPTTPNSAT GHQPRPQSTI 180 AMTVNPSPLP TISHVNSTVP SAAPHPIITS QGIATSTIPN SLFPPTNPII FPPPPQPQQN 240 PTSHHHQQST FISSTDLLSN STSSSTSSDE EMEGRAKRKR KWKDFFERLM KEVVHKQEDL 300 QKRFLEAIEK REHERMAREE AWRMQEMTRI HRESEILAQE RSITAAKDAA VMSFLQKISE 360 QQATPTNTNN NLLTPQPPST VQQSAAPPPP PPRQQPTPPP PAVLISQAPI TNFEIIPRAN 420 SNNGENNNTN NNLVSPSRTT SSSRWPRVEV HSLIKLRTSM DSKYQENGPK GPLWEEISGA 480 MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHLLDSL YRERNKLDHI 540 TNNNDNSLSK PENAAPLMVR PEQQWQPPDR VESEMESEPI DQNHEDEDRG DGDEEEDEDD 600 EEDEGNYEIV ANKGASVSVG TAAAE

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence

MLGDLGSSSD AATATATAMA AEPFRAREGG GGDGGVGSNS GEEDRNNYSR GGSGGGGGGE  60
EFGDKSFGGN RWPRQETLAL LKIRSDMDVA FRDASVKGPL WDEVSRKLAE LGFHRSAKKC  120
KEKFENVYKY HRRTKEGRTG KSDGKTYRFF DQLQALENQP PTPTTPNSAT GHQPRPQSTI  180
AMTVNPSPLP TISHVNSTVP SAAPHPIITS QGIATSTIPN SLFPPTNPII FPPPPQPQQN  240
PTSHHHQQST FISSTDLLSN STSSSTSSDE EMEGRAKRKR KWKDFFERLM KEVVHKQEDL  300
QKRFLEAIEK REHERMAREE AWRMQEMTRI HRESEILAQE RSITAAKDAA VMSFLQKISE  360
QQATPTNTNN NLLTPQPPST VQQSAAPPPP PPRQQPTPPP PAVLISQAPI TNFEIIPRAN  420
SNNGENNNTN NNLVSPSRTT SSSRWPRVEV HSLIKLRTSM DSKYQENGPK GPLWEEISGA  480
MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHLLDSL YRERNKLDHI  540
TNNNDNSLSK PENAAPLMVR PEQQWQPPDR VESEMESEPI DQNHEDEDRG DGDEEEDEDD  600
EEDEGNYEIV ANKGASVSVG TAAAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-84	Trihelix family protein