PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G15904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23016 Da PI: 8.0703 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.3 | 1.1e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ +l++++ ++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++++q+++e Ro02_G15904 2 SCNGCRVLRKGCSENCMLRQCIewmedPQAQAHATVFVAKFFGRAGLLSFINGVSETQRPALFQSLLFEAVGRTINPVNGATGLLLAGNWKVCQSAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Ro02_G15904 100 TVLR 103 8876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MSCNGCRVLR KGCSENCMLR QCIEWMEDPQ AQAHATVFVA KFFGRAGLLS FINGVSETQR 60 PALFQSLLFE AVGRTINPVN GATGLLLAGN WKVCQSAVET VLRGGALEPL PEYSRHGVHH 120 VRQQRRDEHY STKSSTKKRP GLLALDDDER PDLDLSLKAL SKVRRDGHDR AATPSSVEDS 180 ETTTLSRSGS SSADCTTNGL EGTNLLRLFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-65 | LBD family protein |