PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G15454

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 699aa MW: 77297.5 Da PI: 6.1805

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G15454	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3e-09	451	488	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Ro02_G15454 451 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 488 664459******************************88 PP
2	BELL	129.1	1.5e-41	313	384	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF++vag+g+akpYt++Al++iSrhFrcL+dai++qi Ro02_G15454 313 EKQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVVAGCGAAKPYTAVALQTISRHFRCLRDAITGQI 384 689********************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MIAKNRFLCD LSQNNWARRF QIDTNMATYY TNSNNQKDAT PMLYSREPLT SSYPETPVLP 60 GNMMMYMNSG SYSDALAGSS QQQNNCIEVV STVGASDSNT QQQDVLSHLG GSRIGEQGFN 120 AWRDSRNEML VTNPMDGSAT ILHGGQNLQG QGLSLSLSTQ ITSGMQMPSM SYRNPNMGFA 180 SFLSPNPSLS SEGRNGSFRD DQTRNVEYLQ PGFLGGNADS SKGDLSPYGM SSVARNIPNS 240 KYLKAAQQLL DEVVNVQKAL KQHDREKNES ANEHTMKSFK EGDDGSKNEL ESGESSNPQE 300 SASNSPSELS HAEKQELQNK LTKLLSMLDE VDRRYKQYYH QMQIVVSSFD VVAGCGAAKP 360 YTAVALQTIS RHFRCLRDAI TGQIRATQKS LGEQGTTGSI KGVGITRLRY VDQQLRQQRA 420 LQQLGMMQQH AWRPQRGLPE TSVSILRAWL FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN 480 WFINARVRLW KPMVEEMYKE EAGDAEMDSN SSSENAPQTK KGDKRTSEDG GEDMQPSASS 540 TSTDRCSTGQ FMDSKSDHYD VEMAGSTGSA SFQNGTRREA EAEYGVVKLR QGQRHGMDES 600 SFFSDGMVQS DRSSERFMAA YHMPELGRFG SGSGVSLTLG LQHCDGGNIP ISSGTPHSFV 660 AMRDDDLYNA AASSVGSETA DFDQQHRFSS SHLLRDFVV

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MIAKNRFLCD LSQNNWARRF QIDTNMATYY TNSNNQKDAT PMLYSREPLT SSYPETPVLP  60
GNMMMYMNSG SYSDALAGSS QQQNNCIEVV STVGASDSNT QQQDVLSHLG GSRIGEQGFN  120
AWRDSRNEML VTNPMDGSAT ILHGGQNLQG QGLSLSLSTQ ITSGMQMPSM SYRNPNMGFA  180
SFLSPNPSLS SEGRNGSFRD DQTRNVEYLQ PGFLGGNADS SKGDLSPYGM SSVARNIPNS  240
KYLKAAQQLL DEVVNVQKAL KQHDREKNES ANEHTMKSFK EGDDGSKNEL ESGESSNPQE  300
SASNSPSELS HAEKQELQNK LTKLLSMLDE VDRRYKQYYH QMQIVVSSFD VVAGCGAAKP  360
YTAVALQTIS RHFRCLRDAI TGQIRATQKS LGEQGTTGSI KGVGITRLRY VDQQLRQQRA  420
LQQLGMMQQH AWRPQRGLPE TSVSILRAWL FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN  480
WFINARVRLW KPMVEEMYKE EAGDAEMDSN SSSENAPQTK KGDKRTSEDG GEDMQPSASS  540
TSTDRCSTGQ FMDSKSDHYD VEMAGSTGSA SFQNGTRREA EAEYGVVKLR QGQRHGMDES  600
SFFSDGMVQS DRSSERFMAA YHMPELGRFG SGSGVSLTLG LQHCDGGNIP ISSGTPHSFV  660
AMRDDDLYNA AASSVGSETA DFDQQHRFSS SHLLRDFVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-120	TALE family protein