PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G13786
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 282aa    MW: 32431.5 Da    PI: 6.0817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G13786genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-50101381129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF P+deelv++yL kkv++++     ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ v++  +g
  Ro02_G13786  10 LPPGFRFYPSDEELVCHYLYKKVTNEEALK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRLVVDPgTG 106
                  79***********************99544.78***************88888999**************************************9788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  e vg++ktLvfy++rap+g kt W+mhe+rle
  Ro02_G13786 107 EIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                  99***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KVTNEEALKG TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRLV VDPGTGEIVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKEE MSTMKLSPDD LMLETTISRT  180
APLTIPPTHS DQNIHCGYSN QITSFSTTPP NHSHSHSHNN HSNSLLNLLQ LSQEKYTDSI  240
TEISSKNDDY GFLWDMNLEE SGFENGTLDD MRFELENSMV VL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-93NAC family protein