PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G13096
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 532aa    MW: 59995.5 Da    PI: 4.4393
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G13096genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.46.2e-4961341129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrF+Ptd elv++yLk+kv gk+l++ +vi+evdiyk+ PwdLp k + ++++ +wyfFs+r+kkya+g r nrat+ gyWk+tgkd++vl  +
  Ro02_G13096   6 LPPGFRFNPTDVELVQYYLKRKVMGKRLHV-KVIAEVDIYKCAPWDLPdKsCWRSGDLKWYFFSPREKKYASGARMNRATDCGYWKTTGKDRSVLY-N 101
                  79****************************.99**************96446777888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                   e vg  ktL+f++grap+ge+t+Wv+heyrle
  Ro02_G13096 102 AEIVGFIKTLIFHTGRAPRGERTNWVLHEYRLE 134
                  99*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MGKSSLPPGF RFNPTDVELV QYYLKRKVMG KRLHVKVIAE VDIYKCAPWD LPDKSCWRSG  60
DLKWYFFSPR EKKYASGARM NRATDCGYWK TTGKDRSVLY NAEIVGFIKT LIFHTGRAPR  120
GERTNWVLHE YRLEDKNVVD MGVPQDSYVL CMVFQKDGIG PRNNTQYGAP FKEEDWTDDE  180
VEIDVGPYAN MSEPDLVHAN MPKPDLVCAN MPEPDLVHAN MPATDLVRAN MPEPDRVHAN  240
MPEPDCVHAN MPEPDLVHAN MTEPDLVHAN MTEPDLVHAN MTEPDLVHGN MPDPFLVYPD  300
MPQLDLVYAK MSEPYLVLPS NYNSSIATRT NSHESCVSDI LPPFSNVLQS VSSNYVTTEK  360
PHVSTDDDIL SMIDCFTEEG TFSMGDIGKN EELDNLFYSG GTNPIADFQR RDIYEDLGDW  420
GNGHNSMCVP NHMPPGDNEP FLELVDLDKP LNGNDSLVTQ HLPMFSPPRT FPGETPYEDS  480
QCGKDICNFL NEHNSMCTPD QMLPVDLDKP LNGNDSLVAQ HLPMFTSPQL LT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.31e-95NAC family protein