PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G13095

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 412aa MW: 46188.6 Da PI: 4.7567

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G13095	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.6	9e-48	7	134	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppGfrF+Ptd elv++yLk+kv gk+l++ +vi+evdiyk+ PwdLp k + + ++ +wyfF++r+kkya+g r nrat++gyWk++gkd++v +g Ro02_G13095 7 PPGFRFSPTDVELVKYYLKRKVMGKRLPV-KVIAEVDIYKYSPWDLPdKsCWRFGDLKWYFFCPREKKYASGARVNRATEAGYWKTSGKDRSVQY-DG 102 9**************************.99**********96345666889*********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 e+vg ktL+f++gr p+ge+tdWv+heyrle Ro02_G13095 103 EVVGWIKTLIFHTGRPPRGERTDWVLHEYRLE 134 ****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGKSSFPPGF RFSPTDVELV KYYLKRKVMG KRLPVKVIAE VDIYKYSPWD LPDKSCWRFG 60 DLKWYFFCPR EKKYASGARV NRATEAGYWK TSGKDRSVQY DGEVVGWIKT LIFHTGRPPR 120 GERTDWVLHE YRLEDKGLAD MGVPQESYVL CIIFQKEGPG PNNGAQYGAP FKEEEWTDDE 180 VEICLDTVPH ANGPEPDLVL LRDYNSSIAT STDFPESMCI GPSSESCISD LVPPSCNVRG 240 SVSSNYVTTE KRCVSANDDI LPMFDCFVEE STFLINGNDK NKELDNLIHS VNANATQELD 300 NMIHSGNTTA TQDLDILIHS GNANATQELD NILHSGNANA TVHLKRSDIY KDLGDLGNLG 360 RVEDGYNLSS GHSSLYTMDE IFELVDLDKP LNCDTSMYTH HLPSHLPGRD TT

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGKSSFPPGF RFSPTDVELV KYYLKRKVMG KRLPVKVIAE VDIYKYSPWD LPDKSCWRFG  60
DLKWYFFCPR EKKYASGARV NRATEAGYWK TSGKDRSVQY DGEVVGWIKT LIFHTGRPPR  120
GERTDWVLHE YRLEDKGLAD MGVPQESYVL CIIFQKEGPG PNNGAQYGAP FKEEEWTDDE  180
VEICLDTVPH ANGPEPDLVL LRDYNSSIAT STDFPESMCI GPSSESCISD LVPPSCNVRG  240
SVSSNYVTTE KRCVSANDDI LPMFDCFVEE STFLINGNDK NKELDNLIHS VNANATQELD  300
NMIHSGNTTA TQDLDILIHS GNANATQELD NILHSGNANA TVHLKRSDIY KDLGDLGNLG  360
RVEDGYNLSS GHSSLYTMDE IFELVDLDKP LNCDTSMYTH HLPSHLPGRD TT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	1e-102	NAC family protein