PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G10128
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 104aa    MW: 11609.8 Da    PI: 9.4526
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G10128genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-081457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   + + +a + + ++   +W  +ar +g g+t++++k ++
      Ro02_G10128 14 SWTAKQNKAFEKALAVYDKDtpdRWYNVARAVG-GKTPEEVKRHY 57
                     7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MASSSMSSRN SGSSWTAKQN KAFEKALAVY DKDTPDRWYN VARAVGGKTP EEVKRHYDLL  60
VEDVKHIESG QVPFPDYRTS GGSGSGHGNM GHDEEKRMRN LKLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-39MYB_related family protein