PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G10120
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 104aa    MW: 11678 Da    PI: 8.2264
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G10120genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-091458344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +++ ++   +W  +a+ +g ++t++++k ++
      Ro02_G10120 14 CWTPKQNKLFEKALALYDKDtpeRWQNVAKAVGGNKTAEEVKRHY 58
                     6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MASSSLRKHS SNSCWTPKQN KLFEKALALY DKDTPERWQN VAKAVGGNKT AEEVKRHYEI  60
LLEDLRQIES GRVPIPNYKS LGTTSTNVDE EERGNHCSIT SVGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-38MYB_related family protein