PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G10116

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 425aa MW: 46934.5 Da PI: 6.7113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G10116	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	233	280	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ro02_G10116 233 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 280 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MNRALPEMLN CMNAPGSLVA AGNCTDMTVL DRQRARMKWQ HDQLQQQQHQ GYFGGSELNG 60 VFSHLPIQAS QQVQSFQGLI GLGDSGMGQA VKPDPSSENG WAKLGHGSCG FEMNGSNNIS 120 RTFSCPPKVA AETKNNNTVV TDKISSPAGK ESFKKRKADK AQNNKAVAED DTSDKRIKGC 180 AEEGDSKITE QNSTKNNDRE SSADTSKENS KASEVQKPDY IHVRARRGQA TDSHSLAERV 240 RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN 300 IDDLFAKEMF PANMTNFQSI GMSSEMTNSA YVQFNHVQQL LQCSGLESGI TSPESALLRR 360 TISAPLSIPE TFLDTSCFTQ VQPPTTWDAD IQNLFNVEFH QGRTGPFQSQ PFTGSIEASN 420 LKMEM

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MNRALPEMLN CMNAPGSLVA AGNCTDMTVL DRQRARMKWQ HDQLQQQQHQ GYFGGSELNG  60
VFSHLPIQAS QQVQSFQGLI GLGDSGMGQA VKPDPSSENG WAKLGHGSCG FEMNGSNNIS  120
RTFSCPPKVA AETKNNNTVV TDKISSPAGK ESFKKRKADK AQNNKAVAED DTSDKRIKGC  180
AEEGDSKITE QNSTKNNDRE SSADTSKENS KASEVQKPDY IHVRARRGQA TDSHSLAERV  240
RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN  300
IDDLFAKEMF PANMTNFQSI GMSSEMTNSA YVQFNHVQQL LQCSGLESGI TSPESALLRR  360
TISAPLSIPE TFLDTSCFTQ VQPPTTWDAD IQNLFNVEFH QGRTGPFQSQ PFTGSIEASN  420
LKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-69	bHLH family protein