PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G09587
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 378aa    MW: 42110.9 Da    PI: 4.7131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G09587genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.8e-16235271135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp +Rrgp+g+++LCnaCGl+++ kg+
  Ro02_G09587 235 CQHCGISEksTPAMRRGPNGPRSLCNACGLRWANKGT 271
                  *****99999************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MEAVNVQPLQ ARRPYEGEDE QLVQIPPAEE SEGDYENGAE AGAGAGGDQS RRSSQFTMSR  60
CTNSARTSEL TISFEGEVYV FPAVTPDKDG WRLLMIMDDS YWCRLFMDFV YRTNILEKGR  120
QVQAVLLLLG GRDMPGSDIP SSVPSSGFSL QQNSRGIGDI SRNSKLSRRF ASLVRFREKR  180
KERCFDKKIR YSCRKDIAER MHRKNGQFAS LKDPSKLVVG NCDSSDSTSC PESVCQHCGI  240
SEKSTPAMRR GPNGPRSLCN ACGLRWANKG TLRDLKKSGR AVSFDQNELE SPEENKPIAL  300
DTEVPPLSLG DQDMLETAEA ATNHVSIQME NSSVNLDEQE NLDELANASG TEFEIPVNFE  360
EQVVDFYDCN METHWGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-57GATA family protein