PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G08020

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 397aa MW: 44493.1 Da PI: 8.6686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G08020	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	196	243	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L ++YIk+Lq Ro02_G08020 196 QDHIIAERKRREKLSQRFIALSAMVPGL-----KKMDKASVLGDSIKYIKQLQ 243 6799**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MATMAMVTIS HQLPRFLLPW ALDHQAKEAK PMEISSIGGL TELGMEDPFF INQWHMNSLD 60 ELSMRPLTAA FGEELQQSQC HPIFNPRTST TNSHSAIDRP MKQLKPNNWS SCKTDHAPNP 120 QVSSLPNLLS FVNSYNTNQM GVVRPKEEMA VCSKSIHTLP SDILISQGSF GNQNSLFKAG 180 QGTKRISTNT RLSQTQDHII AERKRREKLS QRFIALSAMV PGLKKMDKAS VLGDSIKYIK 240 QLQEKVKELE EQTRAKNMES VVFVRKSQLI ANGDNYTSSN ESNSNGSFEE TLPEIEARFC 300 DNNVLIRVHC EKRKGVVEKI IAEVERLQLK LINSSVMTFG SCALDVTIIA QMEVEFCLSV 360 KDLVKNLRSA FDLFIIQLML DGVGAGGKTL KNGQYRQ

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MATMAMVTIS HQLPRFLLPW ALDHQAKEAK PMEISSIGGL TELGMEDPFF INQWHMNSLD  60
ELSMRPLTAA FGEELQQSQC HPIFNPRTST TNSHSAIDRP MKQLKPNNWS SCKTDHAPNP  120
QVSSLPNLLS FVNSYNTNQM GVVRPKEEMA VCSKSIHTLP SDILISQGSF GNQNSLFKAG  180
QGTKRISTNT RLSQTQDHII AERKRREKLS QRFIALSAMV PGLKKMDKAS VLGDSIKYIK  240
QLQEKVKELE EQTRAKNMES VVFVRKSQLI ANGDNYTSSN ESNSNGSFEE TLPEIEARFC  300
DNNVLIRVHC EKRKGVVEKI IAEVERLQLK LINSSVMTFG SCALDVTIIA QMEVEFCLSV  360
KDLVKNLRSA FDLFIIQLML DGVGAGGKTL KNGQYRQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	ERKRRE
2	203	208	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-58	bHLH family protein