PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07074

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 509aa MW: 56179.8 Da PI: 6.5987

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07074	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.8e-07	22	66	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r+C+ +++ + l+C+ ++ lC +C e H+ Ht++ Ro02_G07074 22 KQRVCDYCGDSMALLYCRADSAKLCFSCDREVHSAnqlftkHTRS 66 789*****99*******************668889889876 PP
2	zf-B_box	29.7	1.3e-09	66	109	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ ++e ++++fC + ++ lC++C e H + H+++p Ro02_G07074 66 SQLCDACDEAPASIFCSTESSVLCQNCDWERH-NlssssvHDRRP 109 678*****************************.558888888877 PP
3	CCT	58.2	3e-20	343	382	1	40
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrF 40 Re al+RYkeK+ktR+++K+irYesRK++AesR R+KGr Ro02_G07074 343 RESALSRYKEKKKTRRYDKHIRYESRKVRAESRTRIKGRH 382 99************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MNGSKEEGEG GGGGHQNMRA QKQRVCDYCG DSMALLYCRA DSAKLCFSCD REVHSANQLF 60 TKHTRSQLCD ACDEAPASIF CSTESSVLCQ NCDWERHNLS SSSVHDRRPL EGFTGNPCLN 120 ELLAFVGFEN LDKKALIFSE ESGSGGDGGG LDGSLGLSDG FSDFLVWETP SVVSLDDLIV 180 SDPAHKFQAM GVPPLPKNRN AACGRRKEEI LSQLRTLAKS EPNLMNENVD LNSFMSFQCL 240 ESEQNMQSGG FCTNFEHDAE PLAFPAYEAQ EFESNDCDKS ANQDFFPKTL QRSYLQDCSM 300 VPDLNSNNDG TASHASDGYG GQMNSEDSSA FPKVPSHECS LHRESALSRY KEKKKTRRYD 360 KHIRYESRKV RAESRTRIKG RHGSTGMQSY ENAITISLVP NLASPSDQTQ LAIPRKTLAR 420 IRHTDRVSGA SISHYPFGFC NKLTTTISPM SAMAKAVPCL FLYILSANLF RLSTLVLGKP 480 TSELTYHKGE HCSGISYLKE EAKSIRSKS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MNGSKEEGEG GGGGHQNMRA QKQRVCDYCG DSMALLYCRA DSAKLCFSCD REVHSANQLF  60
TKHTRSQLCD ACDEAPASIF CSTESSVLCQ NCDWERHNLS SSSVHDRRPL EGFTGNPCLN  120
ELLAFVGFEN LDKKALIFSE ESGSGGDGGG LDGSLGLSDG FSDFLVWETP SVVSLDDLIV  180
SDPAHKFQAM GVPPLPKNRN AACGRRKEEI LSQLRTLAKS EPNLMNENVD LNSFMSFQCL  240
ESEQNMQSGG FCTNFEHDAE PLAFPAYEAQ EFESNDCDKS ANQDFFPKTL QRSYLQDCSM  300
VPDLNSNNDG TASHASDGYG GQMNSEDSSA FPKVPSHECS LHRESALSRY KEKKKTRRYD  360
KHIRYESRKV RAESRTRIKG RHGSTGMQSY ENAITISLVP NLASPSDQTQ LAIPRKTLAR  420
IRHTDRVSGA SISHYPFGFC NKLTTTISPM SAMAKAVPCL FLYILSANLF RLSTLVLGKP  480
TSELTYHKGE HCSGISYLKE EAKSIRSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	4e-89	CO-like family protein