PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G07068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 1095aa    MW: 119853 Da    PI: 8.9282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G07068genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-104571127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++ ++C +++rtG+C yG rC+++H++
  Ro02_G07068 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71
                 5789*********************96 PP

2zf-CCCH38.71.6e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C+++++tGtCk+G++CkF+H++
  Ro02_G07068  92 EPVCQYYLKTGTCKFGASCKFHHPK 116
                  789********************96 PP

3zf-CCCH35.61.6e-11137162227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C+++++tG+Ck+G +CkF+H++
  Ro02_G07068 137 GENECSYYLKTGQCKFGLTCKFHHPQ 162
                  6789********************97 PP

4zf-CCCH34.53.5e-11293319127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++C+++H++
  Ro02_G07068 293 PGEPECQYYLRTGDCKFGPSCRYHHPR 319
                  5799*********************96 PP

5zf-CCCH34.53.4e-11340365227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +  +C f++++G+Ck+G++CkF H++
  Ro02_G07068 340 GVQPCTFYLQNGHCKFGSSCKFDHPM 365
                  6789********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1095 aa     Download sequence    
MDMYGRSPAR NGSNPEWSSG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGGG  120
SLTRAPLNIF GYPLRPGENE CSYYLKTGQC KFGLTCKFHH PQPAGTTVPA SAPQFYPSVQ  180
SPSVPMPEQF GGQSTGLRVA RPPLLPGSYV QGAYGPVLIP PGVVPIPGWS PYSAPLSPVL  240
SPGAQPTVGA TSLYGLTQLS SPTHALARPY TSVPSSVGPS SSSPNEQAFP ERPGEPECQY  300
YLRTGDCKFG PSCRYHHPRE RIAPRTNCLL SPVGLPLRPG VQPCTFYLQN GHCKFGSSCK  360
FDHPMGTMRY SPSASSLDMP VAPYPVGSLL GTLAPSSSSS ELRPELISAR MPSSGNPSSS  420
SVGLIFSQSG GSVSLSDVQL SSQTSVPISS SRSTRQGGEV FEEMGVVTVG ELKPSISGKR  480
SFRPSSSIRH ATEWPISDVS SDLTVEIGAS SFALHKFPLV SRSGRIRKML LEAKDSKVSR  540
VILPSVPGGA EAFELAAKFC YGINIEITQA NVALLRCAAH FLEMTEEYAE KNLETRTEAY  600
LKDMVLPNIS KSISVLHRCE TLLPAAEETN LVSRLINAIA NNACKEQLTS GLLKLDHNFP  660
TKVASMEPET PSDWWGKALS VLSLDFFQRV LSAVKTKGLK QDIISKILIN YAHNSLQGLV  720
VRDTQLVKGS LLDLELQKKQ RVIVEAMVSL LPTQSRKSPV PMAFLSSLLK TAIAASASTS  780
CKSDLERRIG LQLDQAILED ILIPTNSHGN NHSTIYDADT IVRIFSIFLN LDEDDEDDTN  840
PLRDESQMVY DFDSPGSPKQ SSILKVSKLL DNYLAEVALD SNLSPSKFTA LAELLPDHAR  900
IVSDGLYRAV DIFLKVHPNM KDSERYRLCK TIDCQKLSQE ACSHAAQNER LPVQMAVQVL  960
YFEQIRLRNA MNGGHNQFFF GAINGTQFPQ RSGSGAGSGA ISPRDNYASV RRENRELKLE  1020
VARMRMRLTD LEKDHVSMKQ ELVKTHPANK LFKSFTKKLG KINALFRINS IKTLGGKAHS  1080
ESRFPFQKRR RHSVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.10.0C3H family protein