PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07068

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 1095aa MW: 119853 Da PI: 8.9282

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07068	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ Ro02_G07068 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71 5789*********************96 PP
2	zf-CCCH	38.7	1.6e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ Ro02_G07068 92 EPVCQYYLKTGTCKFGASCKFHHPK 116 789********************96 PP
3	zf-CCCH	35.6	1.6e-11	137	162	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Ro02_G07068 137 GENECSYYLKTGQCKFGLTCKFHHPQ 162 6789********************97 PP
4	zf-CCCH	34.5	3.5e-11	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Ro02_G07068 293 PGEPECQYYLRTGDCKFGPSCRYHHPR 319 5799*********************96 PP
5	zf-CCCH	34.5	3.4e-11	340	365	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ Ro02_G07068 340 GVQPCTFYLQNGHCKFGSSCKFDHPM 365 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence
MDMYGRSPAR NGSNPEWSSG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG 60 YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGGG 120 SLTRAPLNIF GYPLRPGENE CSYYLKTGQC KFGLTCKFHH PQPAGTTVPA SAPQFYPSVQ 180 SPSVPMPEQF GGQSTGLRVA RPPLLPGSYV QGAYGPVLIP PGVVPIPGWS PYSAPLSPVL 240 SPGAQPTVGA TSLYGLTQLS SPTHALARPY TSVPSSVGPS SSSPNEQAFP ERPGEPECQY 300 YLRTGDCKFG PSCRYHHPRE RIAPRTNCLL SPVGLPLRPG VQPCTFYLQN GHCKFGSSCK 360 FDHPMGTMRY SPSASSLDMP VAPYPVGSLL GTLAPSSSSS ELRPELISAR MPSSGNPSSS 420 SVGLIFSQSG GSVSLSDVQL SSQTSVPISS SRSTRQGGEV FEEMGVVTVG ELKPSISGKR 480 SFRPSSSIRH ATEWPISDVS SDLTVEIGAS SFALHKFPLV SRSGRIRKML LEAKDSKVSR 540 VILPSVPGGA EAFELAAKFC YGINIEITQA NVALLRCAAH FLEMTEEYAE KNLETRTEAY 600 LKDMVLPNIS KSISVLHRCE TLLPAAEETN LVSRLINAIA NNACKEQLTS GLLKLDHNFP 660 TKVASMEPET PSDWWGKALS VLSLDFFQRV LSAVKTKGLK QDIISKILIN YAHNSLQGLV 720 VRDTQLVKGS LLDLELQKKQ RVIVEAMVSL LPTQSRKSPV PMAFLSSLLK TAIAASASTS 780 CKSDLERRIG LQLDQAILED ILIPTNSHGN NHSTIYDADT IVRIFSIFLN LDEDDEDDTN 840 PLRDESQMVY DFDSPGSPKQ SSILKVSKLL DNYLAEVALD SNLSPSKFTA LAELLPDHAR 900 IVSDGLYRAV DIFLKVHPNM KDSERYRLCK TIDCQKLSQE ACSHAAQNER LPVQMAVQVL 960 YFEQIRLRNA MNGGHNQFFF GAINGTQFPQ RSGSGAGSGA ISPRDNYASV RRENRELKLE 1020 VARMRMRLTD LEKDHVSMKQ ELVKTHPANK LFKSFTKKLG KINALFRINS IKTLGGKAHS 1080 ESRFPFQKRR RHSVS

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence

MDMYGRSPAR NGSNPEWSSG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGGG  120
SLTRAPLNIF GYPLRPGENE CSYYLKTGQC KFGLTCKFHH PQPAGTTVPA SAPQFYPSVQ  180
SPSVPMPEQF GGQSTGLRVA RPPLLPGSYV QGAYGPVLIP PGVVPIPGWS PYSAPLSPVL  240
SPGAQPTVGA TSLYGLTQLS SPTHALARPY TSVPSSVGPS SSSPNEQAFP ERPGEPECQY  300
YLRTGDCKFG PSCRYHHPRE RIAPRTNCLL SPVGLPLRPG VQPCTFYLQN GHCKFGSSCK  360
FDHPMGTMRY SPSASSLDMP VAPYPVGSLL GTLAPSSSSS ELRPELISAR MPSSGNPSSS  420
SVGLIFSQSG GSVSLSDVQL SSQTSVPISS SRSTRQGGEV FEEMGVVTVG ELKPSISGKR  480
SFRPSSSIRH ATEWPISDVS SDLTVEIGAS SFALHKFPLV SRSGRIRKML LEAKDSKVSR  540
VILPSVPGGA EAFELAAKFC YGINIEITQA NVALLRCAAH FLEMTEEYAE KNLETRTEAY  600
LKDMVLPNIS KSISVLHRCE TLLPAAEETN LVSRLINAIA NNACKEQLTS GLLKLDHNFP  660
TKVASMEPET PSDWWGKALS VLSLDFFQRV LSAVKTKGLK QDIISKILIN YAHNSLQGLV  720
VRDTQLVKGS LLDLELQKKQ RVIVEAMVSL LPTQSRKSPV PMAFLSSLLK TAIAASASTS  780
CKSDLERRIG LQLDQAILED ILIPTNSHGN NHSTIYDADT IVRIFSIFLN LDEDDEDDTN  840
PLRDESQMVY DFDSPGSPKQ SSILKVSKLL DNYLAEVALD SNLSPSKFTA LAELLPDHAR  900
IVSDGLYRAV DIFLKVHPNM KDSERYRLCK TIDCQKLSQE ACSHAAQNER LPVQMAVQVL  960
YFEQIRLRNA MNGGHNQFFF GAINGTQFPQ RSGSGAGSGA ISPRDNYASV RRENRELKLE  1020
VARMRMRLTD LEKDHVSMKQ ELVKTHPANK LFKSFTKKLG KINALFRINS IKTLGGKAHS  1080
ESRFPFQKRR RHSVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein