PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07061

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 866aa MW: 95332.9 Da PI: 6.0022

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07061	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.7e-07	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e ++L+++ g+t +qV+ +F +R + +k Ro02_G07061 65 KRPRDLLNPKAIKYMQSIFSIKDAITKKESRQLSAQFGVTVSQVREFFNSQRSRVRK 121 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence
MEDLSEIEIG NSVESFQKFV DSQRELFHSQ IDELQKIVVA QCKLTGANPL SQEMAAGALS 60 INIGKRPRDL LNPKAIKYMQ SIFSIKDAIT KKESRQLSAQ FGVTVSQVRE FFNSQRSRVR 120 KIVQLSREKA ISSTDHKELL EGVSTNSDPL TPINPLPLNT VGPSNVEDAP SCSTQDDTLS 180 GLDDFDKHFV ENIFNLMRKE ETFSGQVKVL ELILRIQNSS VLCWFLTKGG VMILATWLTQ 240 AADEEQTSVL LIILKIRHIK QGKGFVIEMD IDEAIGDDPW NSNSDVSEDI LALSFESADN 300 LRKSEASEPM KLLTASSDDS NKKHILEFRG RRKVQLVEQP GQKTSGRSSQ AARATPVSQA 360 RPMSVDDIQK AKLRAQYMQS KYGKSGNSSE NKEVKAEGVN KLPVPQASIL PLVPNVPVRS 420 NIEESKKPVT LPLKERETPD RSVQPIGSFQ PIAPKVKTDM KELMWEKCRR VQVPWKTPPE 480 IKLNPEWRVG GGENGKEMDI QKNRNHREQE TIYKTFKEIP LNPKEPWDIE MDYDDSLTPV 540 IPTEQPPEVD GTETQASHSR EVDNAAETLI VPSQGVNSAV SLAPQTNNAS STTEPDLELL 600 AVLLKNPELV FALTSGQGGN LSSEDTVKLL DMIKAGGAGF AGNLNGLASK MEEKVEVSLP 660 SPTPSSNPGT SGWRSEATRN AFPQQSSMQN RVSAGYSSPA MAANNNLVLS QLPSAHTSPL 720 PQRLMGAQQA VPAYSPEHIH QIPHTTTPQT HLHHNYSNTA VPSVWGESTS NGKPSYNSYN 780 VAAERQPNSL PSPFLSTLTQ QQRQPPQSLQ QPPHYSESPH YSESSHYSES PYFSKPSSGK 840 PGPLSDSWRA SRDTGGQTAA DTDSLS

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence

MEDLSEIEIG NSVESFQKFV DSQRELFHSQ IDELQKIVVA QCKLTGANPL SQEMAAGALS  60
INIGKRPRDL LNPKAIKYMQ SIFSIKDAIT KKESRQLSAQ FGVTVSQVRE FFNSQRSRVR  120
KIVQLSREKA ISSTDHKELL EGVSTNSDPL TPINPLPLNT VGPSNVEDAP SCSTQDDTLS  180
GLDDFDKHFV ENIFNLMRKE ETFSGQVKVL ELILRIQNSS VLCWFLTKGG VMILATWLTQ  240
AADEEQTSVL LIILKIRHIK QGKGFVIEMD IDEAIGDDPW NSNSDVSEDI LALSFESADN  300
LRKSEASEPM KLLTASSDDS NKKHILEFRG RRKVQLVEQP GQKTSGRSSQ AARATPVSQA  360
RPMSVDDIQK AKLRAQYMQS KYGKSGNSSE NKEVKAEGVN KLPVPQASIL PLVPNVPVRS  420
NIEESKKPVT LPLKERETPD RSVQPIGSFQ PIAPKVKTDM KELMWEKCRR VQVPWKTPPE  480
IKLNPEWRVG GGENGKEMDI QKNRNHREQE TIYKTFKEIP LNPKEPWDIE MDYDDSLTPV  540
IPTEQPPEVD GTETQASHSR EVDNAAETLI VPSQGVNSAV SLAPQTNNAS STTEPDLELL  600
AVLLKNPELV FALTSGQGGN LSSEDTVKLL DMIKAGGAGF AGNLNGLASK MEEKVEVSLP  660
SPTPSSNPGT SGWRSEATRN AFPQQSSMQN RVSAGYSSPA MAANNNLVLS QLPSAHTSPL  720
PQRLMGAQQA VPAYSPEHIH QIPHTTTPQT HLHHNYSNTA VPSVWGESTS NGKPSYNSYN  780
VAAERQPNSL PSPFLSTLTQ QQRQPPQSLQ QPPHYSESPH YSESSHYSES PYFSKPSSGK  840
PGPLSDSWRA SRDTGGQTAA DTDSLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-169	HB-other family protein