PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07059

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 609aa MW: 65906.4 Da PI: 7.5676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07059	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ro02_G07059 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	15.3	5.7e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Ro02_G07059 142 WKCDKCSKKYAVQSDWKAHQKTC 164 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MSNITGDIEE GSFSSGNTAG EEVHQEKQLQ NHLHGSNSGG GSGGGKNPSA EVIALSPTTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST EVRKRVYICP EPTCVHHNPA 120 RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR 180 DSFITHRAFC DALAEENNKV NHGLIMNTNN LGTHHQMPDH LISSMPMNTN TSMGIGAAAI 240 SEYNNYDPKN PLKSLPEDLV PMPFKSIMNT NLPAGGGMFS SSSGSLFGGP RSVNSSTSSS 300 LQLSSNNSSS SGFNYLQDSK NGCGGSPNVT GSAQMSATAL LQKAAQMGAT ASNTTINSPM 360 MQKSFVTSMA GPENHHLLST SSINVTRPPY DHHHHFQQVQ QQQPHQLQDL QQMVGMHGFT 420 NQLFGDANTT SAAASSAAMS DHMGMFSQVV FNMGSGGSHD QNQALLRNLE QQRFGGSGGE 480 GGDMTTLDLL GLGGARPAPQ NLHEQHQQRL DLEAMSQTRM PMMNPYHQQQ QRSHGDSPVE 540 SNPFGMMIDT SANLDEMILE TAASISLSSA AGELLWHALP CNFVGSSTRG EISGSAGSTD 600 KSEQVTGIR

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MSNITGDIEE GSFSSGNTAG EEVHQEKQLQ NHLHGSNSGG GSGGGKNPSA EVIALSPTTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST EVRKRVYICP EPTCVHHNPA  120
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR  180
DSFITHRAFC DALAEENNKV NHGLIMNTNN LGTHHQMPDH LISSMPMNTN TSMGIGAAAI  240
SEYNNYDPKN PLKSLPEDLV PMPFKSIMNT NLPAGGGMFS SSSGSLFGGP RSVNSSTSSS  300
LQLSSNNSSS SGFNYLQDSK NGCGGSPNVT GSAQMSATAL LQKAAQMGAT ASNTTINSPM  360
MQKSFVTSMA GPENHHLLST SSINVTRPPY DHHHHFQQVQ QQQPHQLQDL QQMVGMHGFT  420
NQLFGDANTT SAAASSAAMS DHMGMFSQVV FNMGSGGSHD QNQALLRNLE QQRFGGSGGE  480
GGDMTTLDLL GLGGARPAPQ NLHEQHQQRL DLEAMSQTRM PMMNPYHQQQ QRSHGDSPVE  540
SNPFGMMIDT SANLDEMILE TAASISLSSA AGELLWHALP CNFVGSSTRG EISGSAGSTD  600
KSEQVTGIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	5e-91	C2H2 family protein