PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07015

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 547aa MW: 59610.9 Da PI: 6.3799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07015	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.2e-16	323	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Ro02_G07015 323 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 369 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MNHCVPEFEM EDDYAIPTSS ARTRKSAVPE DEIMELLWQN GQVVMQSQNQ RSVHKNCKYD 60 AVIPDHSRTP DSQPPPQPGN QNPQLFIQEE EMASWLQYPL GDDDPFCADL LYSDSPAVQS 120 NNTTANPPPI SAPPSRPPIH PLPRRTELQN FLHFSRNNNN NNNKSRIESA APSGSKNVVR 180 ESTTVDSSDT PLVPPSSRVM DSRPDASHTG MSMSGGGRGL ASTTTTSFGA TAAASASASA 240 GKEAMTCEMS LTSSPGGSSA SGSASAEQTW LQKPPPAEVR KRKGREAADD AECPNEDVEF 300 ESASAKKQTR GSSSTKRSRA AEVHNLSERR RRDRINEKMR ALQELIPRCN KSDKASMLDE 360 AIEYLKSLQL QVQMMSMGCG MVPMMFPGVQ HYMPMGMGMG MGMGMGMEMG MNRPMMPFSN 420 VLAGSSMPTA AAAAHMGPRF PMPAFQMQTM LPNDPTRVQA TNQSEHMLNS LGTQNPNQSQ 480 MPNFADPYQQ YITSQQMHLP LQQNQAMAQP STSKQGSSRG PENHESSNFG GLITEGSCLL 540 SFVVLKL

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MNHCVPEFEM EDDYAIPTSS ARTRKSAVPE DEIMELLWQN GQVVMQSQNQ RSVHKNCKYD  60
AVIPDHSRTP DSQPPPQPGN QNPQLFIQEE EMASWLQYPL GDDDPFCADL LYSDSPAVQS  120
NNTTANPPPI SAPPSRPPIH PLPRRTELQN FLHFSRNNNN NNNKSRIESA APSGSKNVVR  180
ESTTVDSSDT PLVPPSSRVM DSRPDASHTG MSMSGGGRGL ASTTTTSFGA TAAASASASA  240
GKEAMTCEMS LTSSPGGSSA SGSASAEQTW LQKPPPAEVR KRKGREAADD AECPNEDVEF  300
ESASAKKQTR GSSSTKRSRA AEVHNLSERR RRDRINEKMR ALQELIPRCN KSDKASMLDE  360
AIEYLKSLQL QVQMMSMGCG MVPMMFPGVQ HYMPMGMGMG MGMGMGMEMG MNRPMMPFSN  420
VLAGSSMPTA AAAAHMGPRF PMPAFQMQTM LPNDPTRVQA TNQSEHMLNS LGTQNPNQSQ  480
MPNFADPYQQ YITSQQMHLP LQQNQAMAQP STSKQGSSRG PENHESSNFG GLITEGSCLL  540
SFVVLKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	333	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	4e-65	bHLH family protein