PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G05505

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-PHD

Protein Properties

Length: 1233aa MW: 134745 Da PI: 4.5868

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G05505	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.5	9.8e-13	1079	1122	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e+LA++lg+ +qV+ WF N R Ro02_G05505 1079 EAVTQQLYTSFKENQYPDRSMKERLAQELGVMAKQVSKWFENAR 1122 567899************************************99 PP
2	PHD	37.4	5.7e-13	703	758	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l see+p + wlC+ C++k Ro02_G05505 703 FCAKCGSkdVYADNDIILCDGaCDRGFHQHCLEPPLLSEEIPPDdeGWLCPGCDCK 758 6999964445****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1233 aa Download sequence
MNMADAAQLD NPPECMTSQT AKCQEESTSG QTHEVGSESR CSEPTKQKID CDVLRNEVQD 60 ICKASNNTAE QLQSFSGNVT ENSHPEQLGL PPEDVSNRSQ GGVTNIYTKS SAHGHHSGSG 120 HIQNESLRTT TAISSCTTND HLHSFAGNVT KNSLAEQLEL PREEPHEDLG VNCQTGKTSC 180 FQQISLEQRN DFGFGTSSSE TGKEKQHFGS DIVQNELLQS IIPVSSCGNE QLQSISESVN 240 MTSLIEQAGV PPEDVSKTLE PTNDFGFGTS SSELVEDKQH FGSDVSQNEP LHNQFLTGTF 300 RLEVPSCDGN EQLQSICENV ITSSLNEPAG LPCEDVSKTL EQTNDVGFGT SYSEPAEDNQ 360 HLGSDFVQDE PLQTVIPVLS CGGNEQLQVV SENVNVTSLS EQAGHPPEAV GKTCQTDKIS 420 CALQTALDQI NESGCGSVHS EPQEQKDQLG SLPAQNDQVK TSTAVSSSIV FEQSGPSVED 480 MKKNFVVGQL EPPLEDASTN PSYELIEPHT KCATEKSSLE PSETVSENAS KNSSQFGCKD 540 KQNSSSRKKS KSLVSSDRVL RSRTGEKPEA PKLSNNVATL ESSNSVANVS DGKEEKRKKR 600 KKKHMERDSA DEFSRIRRHL RYLLNRINYE KSLIDAYSGE GWKGNSLEKL RPEKELQRAT 660 SEILRRKLKI RDLFQRLDSL CAEGMFPESL FDSEGQIDSE DIFCAKCGSK DVYADNDIIL 720 CDGACDRGFH QHCLEPPLLS EEIPPDDEGW LCPGCDCKVD CIDLLNDSQG TDLSITDSWE 780 KVFPEAAVAS SAGQNLENNQ GLPSDDSDDN DYDPDGPDTD EEVQEEESSS DESEYASASD 840 GLEIPKSNDE QYLGLPSDDS EDDDFNPDAP DPNDDVKQES SSSDFTSDSE DLTAALDEDN 900 RSFENVEGPQ SSLLEGSTLL RGSGEQSYKR GQKRHSLKDE LSSLLESDPG QDGSTPVSGK 960 RHVERMDYKK LHDETYGNVP SSDDEDYNET AAPRKRKKGT GQVSPGSLKG KPSTIKNGVI 1020 TKDIKHVPDE NEHTPKRTPR RKSNAKDTSS SPNKSLKSSP KSGSTSGRAR SSTYRRLGEA 1080 VTQQLYTSFK ENQYPDRSMK ERLAQELGVM AKQVSKWFEN ARHCVKAGLA VPQAMRKQLN 1140 QGETIIRDAD HDGAQKNELP GTDDATAGCC SRDVKDNNLA TPKSSGAKPS TPKGRKRKCR 1200 SDHGASDLDA KIKTPPETNS KSGRVTRRRK SVA

Sequence ? help Back to Top

Protein Sequence Length: 1233 aa Download sequence

MNMADAAQLD NPPECMTSQT AKCQEESTSG QTHEVGSESR CSEPTKQKID CDVLRNEVQD  60
ICKASNNTAE QLQSFSGNVT ENSHPEQLGL PPEDVSNRSQ GGVTNIYTKS SAHGHHSGSG  120
HIQNESLRTT TAISSCTTND HLHSFAGNVT KNSLAEQLEL PREEPHEDLG VNCQTGKTSC  180
FQQISLEQRN DFGFGTSSSE TGKEKQHFGS DIVQNELLQS IIPVSSCGNE QLQSISESVN  240
MTSLIEQAGV PPEDVSKTLE PTNDFGFGTS SSELVEDKQH FGSDVSQNEP LHNQFLTGTF  300
RLEVPSCDGN EQLQSICENV ITSSLNEPAG LPCEDVSKTL EQTNDVGFGT SYSEPAEDNQ  360
HLGSDFVQDE PLQTVIPVLS CGGNEQLQVV SENVNVTSLS EQAGHPPEAV GKTCQTDKIS  420
CALQTALDQI NESGCGSVHS EPQEQKDQLG SLPAQNDQVK TSTAVSSSIV FEQSGPSVED  480
MKKNFVVGQL EPPLEDASTN PSYELIEPHT KCATEKSSLE PSETVSENAS KNSSQFGCKD  540
KQNSSSRKKS KSLVSSDRVL RSRTGEKPEA PKLSNNVATL ESSNSVANVS DGKEEKRKKR  600
KKKHMERDSA DEFSRIRRHL RYLLNRINYE KSLIDAYSGE GWKGNSLEKL RPEKELQRAT  660
SEILRRKLKI RDLFQRLDSL CAEGMFPESL FDSEGQIDSE DIFCAKCGSK DVYADNDIIL  720
CDGACDRGFH QHCLEPPLLS EEIPPDDEGW LCPGCDCKVD CIDLLNDSQG TDLSITDSWE  780
KVFPEAAVAS SAGQNLENNQ GLPSDDSDDN DYDPDGPDTD EEVQEEESSS DESEYASASD  840
GLEIPKSNDE QYLGLPSDDS EDDDFNPDAP DPNDDVKQES SSSDFTSDSE DLTAALDEDN  900
RSFENVEGPQ SSLLEGSTLL RGSGEQSYKR GQKRHSLKDE LSSLLESDPG QDGSTPVSGK  960
RHVERMDYKK LHDETYGNVP SSDDEDYNET AAPRKRKKGT GQVSPGSLKG KPSTIKNGVI  1020
TKDIKHVPDE NEHTPKRTPR RKSNAKDTSS SPNKSLKSSP KSGSTSGRAR SSTYRRLGEA  1080
VTQQLYTSFK ENQYPDRSMK ERLAQELGVM AKQVSKWFEN ARHCVKAGLA VPQAMRKQLN  1140
QGETIIRDAD HDGAQKNELP GTDDATAGCC SRDVKDNNLA TPKSSGAKPS TPKGRKRKCR  1200
SDHGASDLDA KIKTPPETNS KSGRVTRRRK SVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	596	602	KRKKRKK
2	597	603	KRKKRKK
3	598	602	KKRKK
4	994	998	KKRKK
5	994	998	RKRKK
6	1226	1231	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-87	HB-PHD family protein