PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G04549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 24988.1 Da PI: 9.1911 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.2 | 5e-20 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l ++++ +G++ Wk+Ia + g++R++k+c++rw +yl Ro02_G04549 13 RGSWTAEEDQKLSQVIEIHGPRKWKSIATKAGLNRCGKSCRLRWMNYL 60 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.5e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Ro02_G04549 66 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 111 78999*****************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MVPLSSKNKE VNRGSWTAEE DQKLSQVIEI HGPRKWKSIA TKAGLNRCGK SCRLRWMNYL 60 RPNIKRGNIS DQEEDLILRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNSH LSKKMKHNER 120 SQNRNRVLVS TSSSAAAQEL SEPQNAKLME GNDVIIGRED NNSKRDESYF KSMSFNGSSS 180 GDEFLFGCSN ADEGPLNLEW MNRFLEMDES WFTLHDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-55 | MYB family protein |