PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G04483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16214 Da PI: 11.3949 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.5 | 1.1e-14 | 23 | 95 | 27 | 97 |
DUF260 27 pkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++ f +vhk+FG s+++k++k+l +++r++am+ ++ eA+ r+ +Pv ++g i+kl+++++++++el +l Ro02_G04483 23 QNVFLIVHKVFGGSHLTKFVKNLadFPHKRSTAMKHITAEADLRIAEPVGASFGAISKLRRNIAEEEKELRRL 95 6889*******************666899***************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence |
MDRLLSISSI STKLVPLANT IAQNVFLIVH KVFGGSHLTK FVKNLADFPH KRSTAMKHIT 60 AEADLRIAEP VGASFGAISK LRRNIAEEEK ELRRLRLVLG VYRGVQGNIF DLRFVPVTTM 120 AFTVQERAVT LKARPSQFIS LAIGQT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 2e-10 | LBD family protein |