PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 353aa    MW: 38882.8 Da    PI: 7.6754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04436genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07126147426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f++ G C  Gd+C FaHg
  Ro02_G04436 126 SACPDFRK-GNCAKGDSCEFAHG 147
                  67******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MMIGEPTRLA PTLKVATWDP FDDPASTIGS PFSSRSPSAN AGAGDFSPMF LDSLSALHRF  60
LPSNDSDSLS DDPDMPLISC DQFRMFEFKV RRCARGRSHD WTECPYAHPG EKARRRDPRK  120
YHYSGSACPD FRKGNCAKGD SCEFAHGVFE CWLHPARYRT QPCKDGLACH RRVCFFAHTP  180
EQLRVLPGHS PRTHGSGFFD SSLVSPPISP PSDSPPMSPN SPQLRIGSLN SVSELVASMR  240
NFKLAKMQMS TTPPSWGGSQ MGSGFGSPRG PPPLRPAFCS LPSTPTRCGP GLFDLWEHSL  300
LEEPAMERVE SGRDLRARMY AKLSKENSMG RVGRVDSGPD VDWVSELVSE AET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.16e-96C3H family protein