PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G04436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 353aa MW: 38882.8 Da PI: 7.6754 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 126 | 147 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C Gd+C FaHg Ro02_G04436 126 SACPDFRK-GNCAKGDSCEFAHG 147 67******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence |
MMIGEPTRLA PTLKVATWDP FDDPASTIGS PFSSRSPSAN AGAGDFSPMF LDSLSALHRF 60 LPSNDSDSLS DDPDMPLISC DQFRMFEFKV RRCARGRSHD WTECPYAHPG EKARRRDPRK 120 YHYSGSACPD FRKGNCAKGD SCEFAHGVFE CWLHPARYRT QPCKDGLACH RRVCFFAHTP 180 EQLRVLPGHS PRTHGSGFFD SSLVSPPISP PSDSPPMSPN SPQLRIGSLN SVSELVASMR 240 NFKLAKMQMS TTPPSWGGSQ MGSGFGSPRG PPPLRPAFCS LPSTPTRCGP GLFDLWEHSL 300 LEEPAMERVE SGRDLRARMY AKLSKENSMG RVGRVDSGPD VDWVSELVSE AET |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 6e-96 | C3H family protein |