PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04434

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 390aa MW: 44245 Da PI: 6.2009

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04434	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	317	351	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ Ro02_G04434 317 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 351 669*****************************885 PP
2	ELK	37.8	4.1e-13	271	292	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Ro02_G04434 271 ELKNHLLRKYSGYLSSLKQELS 292 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MEEYNNSNEM DHESSGTPRG NFLYASPNLG GNYGRTAAGD HNQQINTFHL QSSGGECFQS 60 GGTAQPTVKT EAAGSTSQHA PHKFHHQFPP PSLILSRGQN DQLPVQQQQH IENENEVEAI 120 KAKIIAHPHY SNLLQAYMDC QRVGAPSEVV ARLAAARQEF EARQRSLVSS RDASSKDPEL 180 DQFMEAYYDM LVKYREELTR PIQEAMDFMR KIETQLNMLG NDSSTTPLRI FSASAQEDKC 240 DGNGSSEEDQ DNNSGGETEV AEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL 300 PKDARQKLLS WWELHYKWPY PSESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF 360 MVMDGLHPQN AATLYMDGHY IGDGHYRLGP

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MEEYNNSNEM DHESSGTPRG NFLYASPNLG GNYGRTAAGD HNQQINTFHL QSSGGECFQS  60
GGTAQPTVKT EAAGSTSQHA PHKFHHQFPP PSLILSRGQN DQLPVQQQQH IENENEVEAI  120
KAKIIAHPHY SNLLQAYMDC QRVGAPSEVV ARLAAARQEF EARQRSLVSS RDASSKDPEL  180
DQFMEAYYDM LVKYREELTR PIQEAMDFMR KIETQLNMLG NDSSTTPLRI FSASAQEDKC  240
DGNGSSEEDQ DNNSGGETEV AEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL  300
PKDARQKLLS WWELHYKWPY PSESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF  360
MVMDGLHPQN AATLYMDGHY IGDGHYRLGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-131	TALE family protein