PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04415

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 653aa MW: 72043.5 Da PI: 7.5198

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04415	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38	4.1e-12	295	351	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Ro02_G04415 295 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 351 78*****************77776664346655.77****************98 PP
2	AP2	50.6	4.9e-16	394	445	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Ro02_G04415 394 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 445 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MKPINDHNHN NNGSHNNNNN WLGFSLSAPH MKMEVTSSDP HHHYNHHQAQ ASSAASAQLP 60 SSFYNLTPLC YENGGFHSPL TVMPLKSDGS LCIMEALTRS QAEGMVPNSS PKLEDFLGGA 120 SMGAHDYGTQ QREAMALSLD SMYYNENAEA EQHYYSGIPF PGTYQTQMEE ESSKQTHIAG 180 SDSHQMTQNW VTRQYSAAHH ALNQQHMSNN NMVHHDNGGG SGSANGGMHC GDLQSLTLSM 240 SPGSQSSCVT APRQISPTET ECIAMETKKR GSGKISQTKQ PVHRKSIDTF GQRTSQYRGV 300 TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GSSTHINFPL 360 DDYTTQLEEM KNMNRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 420 LYLGTFGTQE EAAEAYDIAA IKFRGVNAVT NFDITRYDVE KIMASNTLLA GEFARRNKEV 480 EPNNQVIEYN PSAQNNVEAN QPENSHGNSS DWKTALYQAA QQQQATATSV QTLDQKSMAS 540 GNYRSPASFS MALQDLIRVE SVNSSQQLMD ESAKSGAHFS NPSSLVTSLS SSREASPDKS 600 GPAMLFAKPP MASKFISPST AVAVSSWFPS AQLRPAAAIS MSHLPMFAAW SDT

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MKPINDHNHN NNGSHNNNNN WLGFSLSAPH MKMEVTSSDP HHHYNHHQAQ ASSAASAQLP  60
SSFYNLTPLC YENGGFHSPL TVMPLKSDGS LCIMEALTRS QAEGMVPNSS PKLEDFLGGA  120
SMGAHDYGTQ QREAMALSLD SMYYNENAEA EQHYYSGIPF PGTYQTQMEE ESSKQTHIAG  180
SDSHQMTQNW VTRQYSAAHH ALNQQHMSNN NMVHHDNGGG SGSANGGMHC GDLQSLTLSM  240
SPGSQSSCVT APRQISPTET ECIAMETKKR GSGKISQTKQ PVHRKSIDTF GQRTSQYRGV  300
TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GSSTHINFPL  360
DDYTTQLEEM KNMNRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  420
LYLGTFGTQE EAAEAYDIAA IKFRGVNAVT NFDITRYDVE KIMASNTLLA GEFARRNKEV  480
EPNNQVIEYN PSAQNNVEAN QPENSHGNSS DWKTALYQAA QQQQATATSV QTLDQKSMAS  540
GNYRSPASFS MALQDLIRVE SVNSSQQLMD ESAKSGAHFS NPSSLVTSLS SSREASPDKS  600
GPAMLFAKPP MASKFISPST AVAVSSWFPS AQLRPAAAIS MSHLPMFAAW SDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-151	AP2 family protein