PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04411

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 577aa MW: 62504.4 Da PI: 9.1354

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.9	4.2e-24	206	250	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e Ro02_G04411 206 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHINRGRHRSRKPVEG 250 79****************************************985 PP
2	QLQ	62.6	1e-21	138	174	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Ro02_G04411 138 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 174 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MDFGVVGLDG FGGSDIGFAT SDQETNNKRY GSGFHKQERS GTVDQEDWRS SKQAKSDDFS 60 APKTMLQLNT GLMRTNSTHF SDGQQVLSFS SSPKSEAQNA TLPSYFQQAV SAYNRNSGNN 120 SGSLNGATVH WTIAGARGPF TPSQWMELEH QALIYKYITA NVPIPSNLLI PIKKALDSAG 180 LFSTGLLRSN TLGWGSIHLG YSNSTDPEPG RCRRTDGKKW RCWRDAVPDQ KYCERHINRG 240 RHRSRKPVEG QTGQSVAGTP ATTTSKKLMP GGGGSSSLAI ANQQLKSLQP PAASNSSAAT 300 QMSRMFMNKE SAGERMQHTP DLSMLSKENS FLIQKQQLGY EESSRSEFGL VTSDALLNPS 360 QKRSSNSLMS CGNFGGSSQN LTVRETDSQH PLRHFIDDWP KNPADRPAVV SWPKQLNMQS 420 DRTQLSISIP KAASSDFIPS TSSTNNEKLT LSPLRMSHEL DSVPMGLGIS SSIEQHTKQA 480 NWIPITWEPS LGGPLGEVLH HTNINAAECK KSSVLNLMSG GWDNNSPSSL GSSPTGVLQR 540 TAFGSVSNSS AGSSPRAENK NTHEGASLCN ELMFPAL

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MDFGVVGLDG FGGSDIGFAT SDQETNNKRY GSGFHKQERS GTVDQEDWRS SKQAKSDDFS  60
APKTMLQLNT GLMRTNSTHF SDGQQVLSFS SSPKSEAQNA TLPSYFQQAV SAYNRNSGNN  120
SGSLNGATVH WTIAGARGPF TPSQWMELEH QALIYKYITA NVPIPSNLLI PIKKALDSAG  180
LFSTGLLRSN TLGWGSIHLG YSNSTDPEPG RCRRTDGKKW RCWRDAVPDQ KYCERHINRG  240
RHRSRKPVEG QTGQSVAGTP ATTTSKKLMP GGGGSSSLAI ANQQLKSLQP PAASNSSAAT  300
QMSRMFMNKE SAGERMQHTP DLSMLSKENS FLIQKQQLGY EESSRSEFGL VTSDALLNPS  360
QKRSSNSLMS CGNFGGSSQN LTVRETDSQH PLRHFIDDWP KNPADRPAVV SWPKQLNMQS  420
DRTQLSISIP KAASSDFIPS TSSTNNEKLT LSPLRMSHEL DSVPMGLGIS SSIEQHTKQA  480
NWIPITWEPS LGGPLGEVLH HTNINAAECK KSSVLNLMSG GWDNNSPSSL GSSPTGVLQR  540
TAFGSVSNSS AGSSPRAENK NTHEGASLCN ELMFPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-89	GRF family protein