PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04033
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 378aa    MW: 43376 Da    PI: 4.928
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04033genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82.1e-34441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sws+ g+sfvvld+++f  ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+
   Ro02_G04033  44 FLNKTYDMVDDPGTNRIVSWSRGGSSFVVLDPHSFVMNLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNIR 131
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Ro02_G04033 132 RRKT 135
                   **86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MNYLYPVKEE YNPSSSSSQW SGDPLVVAPP QPMEGLNDTG PPPFLNKTYD MVDDPGTNRI  60
VSWSRGGSSF VVLDPHSFVM NLLPRFFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQKHLLKNI RRRKTPSQPI PAQQALGPCV EVGRFGLDGE IDRLRRDKQV LMMELVKLRQ  180
QQQSTRAYLQ AMEQRLRGTE RKQQQMMAFL ARAMQNPAFL QQLVQHKEKR KELEEAVTKK  240
RRRPIDPGPS GFGGGESSRR STGFNPVKAE PLEFGDGEYE MSELEALAME IQGFGKARKE  300
PEEELEPPES GDKELDEGFW DELFSERFEG DLSMPSTEIG DDEDVIILAD RLEAVELEKE  360
WLQAPRTINI ILFMDESK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229243KRKELEEAVTKKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123HSF family protein