PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G03951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23459.5 Da PI: 7.6589 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.4 | 6.6e-40 | 18 | 119 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++ Ro02_G03951 18 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTISYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQV 115 7*************************99********************************************************************99 PP DUF260 98 keel 101 k++l Ro02_G03951 116 KAQL 119 9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MASGSTGSSA SATGTGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV 60 SKLLLHVPVH DRCEAVVTIS YEAQARIRDP VYGCVAHIFA LQQQVACLQA QLMQVKAQLA 120 HQNLMDSRNM ENQWQGNVNG VTNFPSYSSY MNPISPQSSL DSIDHSSSDA MNYMQETQNC 180 SREEFSFQGC SMKRAYNSTD LGELQALALR MMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-59 | LBD family protein |