PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G03950

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 396aa MW: 43818.8 Da PI: 6.4334

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G03950	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.2e-38	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la++ Ro02_G03950 8 PCGACKFLRRKCVRGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLPVNDRCRAALTISYEAQARVQDPIYGCVSHIFSLQQQVINLQAQLASA 105 7***********************89*******************************************************************9 PP DUF260 98 kee 100 ke+ Ro02_G03950 106 KEQ 108 987 PP
2	DUF260	117	1.2e-36	180	278	3	100
DUF260 3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 + Ck+lrrkC+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk+ Ro02_G03950 180 NTCKFLRRKCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKD 277 68******************9989******************************************************************9987 PP DUF260 100 e 100 + Ro02_G03950 278 Q 278 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MAGSAGSPCG ACKFLRRKCV RGCIFAPYFC HEQGATHFAA IHKVFGASNV SKLLAQLPVN 60 DRCRAALTIS YEAQARVQDP IYGCVSHIFS LQQQVINLQA QLASAKEQAA KSYSNGSDNS 120 MNPSWLQCSE NLNMMPQNLQ NPNSFGNDEN IMVPEVLNDI YGSFGEASNS MSSLHHMHTN 180 TCKFLRRKCV RGCIFAPYFC HENGATHFAA IHKVFGASNV SKLLAHLPVS DRCEAAVTIS 240 YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKDQAP QSFVNGSEAV ANPNENWFPE 300 LENSSNTVPQ FNSYYHINDG GTTSYYENGI MNSNSIRSSN YDQNSGVRDE NVSSYGSFEE 360 ASPSMSSLDM QTNIRQYWGN FDRDVDELQS MSFSYK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MAGSAGSPCG ACKFLRRKCV RGCIFAPYFC HEQGATHFAA IHKVFGASNV SKLLAQLPVN  60
DRCRAALTIS YEAQARVQDP IYGCVSHIFS LQQQVINLQA QLASAKEQAA KSYSNGSDNS  120
MNPSWLQCSE NLNMMPQNLQ NPNSFGNDEN IMVPEVLNDI YGSFGEASNS MSSLHHMHTN  180
TCKFLRRKCV RGCIFAPYFC HENGATHFAA IHKVFGASNV SKLLAHLPVS DRCEAAVTIS  240
YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKDQAP QSFVNGSEAV ANPNENWFPE  300
LENSSNTVPQ FNSYYHINDG GTTSYYENGI MNSNSIRSSN YDQNSGVRDE NVSSYGSFEE  360
ASPSMSSLDM QTNIRQYWGN FDRDVDELQS MSFSYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	7e-62	LBD family protein