PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G03950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 396aa    MW: 43818.8 Da    PI: 6.4334
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G03950genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.2e-3881081100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la++
  Ro02_G03950   8 PCGACKFLRRKCVRGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLPVNDRCRAALTISYEAQARVQDPIYGCVSHIFSLQQQVINLQAQLASA 105
                  7*************************89*********************************************************************9 PP

       DUF260  98 kee 100
                  ke+
  Ro02_G03950 106 KEQ 108
                  987 PP

2DUF2601171.2e-361802783100
       DUF260   3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                  + Ck+lrrkC+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk+
  Ro02_G03950 180 NTCKFLRRKCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKD 277
                  68********************9989********************************************************************9987 PP

       DUF260 100 e 100
                  +
  Ro02_G03950 278 Q 278
                  6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MAGSAGSPCG ACKFLRRKCV RGCIFAPYFC HEQGATHFAA IHKVFGASNV SKLLAQLPVN  60
DRCRAALTIS YEAQARVQDP IYGCVSHIFS LQQQVINLQA QLASAKEQAA KSYSNGSDNS  120
MNPSWLQCSE NLNMMPQNLQ NPNSFGNDEN IMVPEVLNDI YGSFGEASNS MSSLHHMHTN  180
TCKFLRRKCV RGCIFAPYFC HENGATHFAA IHKVFGASNV SKLLAHLPVS DRCEAAVTIS  240
YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKDQAP QSFVNGSEAV ANPNENWFPE  300
LENSSNTVPQ FNSYYHINDG GTTSYYENGI MNSNSIRSSN YDQNSGVRDE NVSSYGSFEE  360
ASPSMSSLDM QTNIRQYWGN FDRDVDELQS MSFSYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.17e-62LBD family protein