PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02477
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 282aa    MW: 31663.4 Da    PI: 8.8784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02477genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.6e-27130190159
                  ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ k+++  pr+YYrC++a +Cpvkkkv+r+ +d++v++ tYeg+Hnh+
  Ro02_G02477 130 VKDGYQWRKYGQKVTKDNPsSPRAYYRCSMApTCPVKKKVQRCMHDKSVLVATYEGHHNHD 190
                  58**************997369********99****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MEYSDHASSK DKGSKVDHQA ADLQCVRKEN QALRFLLEAM SSKYTRLEAH LQLIQLQLRQ  60
STHDHHHEII STTTTTTGSG GSSYHDKDPT SNKRARTTTI DHHHQYQFLE ANKTSQFLVR  120
TDSKDNSLIV KDGYQWRKYG QKVTKDNPSS PRAYYRCSMA PTCPVKKKVQ RCMHDKSVLV  180
ATYEGHHNHD NSLVLGSAAN NDITIMRRST MEPITLDLTL SASNSSQEKS TPSASSCENN  240
EKLQEYVASF TKDPDFTLAL AAAVARSIKS APPAEHLIKP YI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-41WRKY family protein