PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G02461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ARR-B | ||||||||
Protein Properties | Length: 614aa MW: 67844.6 Da PI: 6.4638 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84 | 1.6e-26 | 201 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av++L G++kA+Pk+il+lm+ + Lt+e+v+SHLQk+Rl Ro02_G02461 201 KPRVVWSVDLHRKFVAAVNKL-GIDKAVPKKILDLMNEEKLTRENVASHLQKFRL 254 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 35.3 | 2.6e-11 | 203 | 253 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ +++ ++v av++lG + +k+I m+ +++t++++ s++qk++ Ro02_G02461 203 RVVWSVDLHRKFVAAVNKLGIDkaVPKKILDLMNeEKLTRENVASHLQKFR 253 678********************************99************97 PP | |||||||
3 | Response_reg | 75.5 | 1.9e-25 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + +++l+++l k +y +v++++++ al+ll+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++++g+ e++ + + Ga Ro02_G02461 20 VLAVDDDVTCLRVLETMLLKCQY-HVTATSHAFTALKLLRENKnkYDLVISDVQMPDMDGFKLLELVGL-EMDLPVIMLSSNGDTELVMKGVTHGAC 114 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l+Kp+ ++el + Ro02_G02461 115 DYLVKPVRIQELKN 128 ***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence |
MTIEPVLDDQ RDQFPIGMRV LAVDDDVTCL RVLETMLLKC QYHVTATSHA FTALKLLREN 60 KNKYDLVISD VQMPDMDGFK LLELVGLEMD LPVIMLSSNG DTELVMKGVT HGACDYLVKP 120 VRIQELKNIW QHVVRRKKVD SKDQANSGNQ DKSHIGSCGG GVGNLDQNVK LNKKRKDQKE 180 DEDDNRDEDG YDNEDPSTQK KPRVVWSVDL HRKFVAAVNK LGIDKAVPKK ILDLMNEEKL 240 TRENVASHLQ KFRLYLKRIS CVANQQANMM AAIGSSDSSY LQMGSFNGVG NYHALTGPGQ 300 FNNTGFRSIP LNGVIGRVNT PPGLGLHCLP SSGSNKLGHG QKNISNSILD QGIFPGNHRN 360 GSMLQANLEL DQRHSKPVGD LSAANNGSPV FPISSGLPDA KLRSSDGVGL TDNPILRHPR 420 DFEVSVAPLK SEIPSPFLDH GRLNDSWSSI AQSSAFRSSN NMPVVMRSCQ FDVPCSQLQD 480 PRPEMPISAD SDPFQGWVWV DHKQDSPYPS DAICSSMDSL MPANVPVAFD HNLDSKGTTL 540 QRNVDFNSIG QSNFRYPVHI KFDEVERSME EASMNLKAGY VMDQRKPQGG LVSNNYGSLD 600 DLVSAMTNQF ANLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 176 | RRKKVDSKDQANSGNQDKSHIGSCGGGVGNLDQNVKLNKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-122 | ARR-B family protein |