PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02407

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 435aa MW: 48696.5 Da PI: 7.185

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02407	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53.4	8.4e-17	68	171	8	128
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105 h tdeel L++ ++g++l+ +vi++v+ y++ P++Lp +++ r+++ ++ t+ gyW+++ + +++s ++ l+g + t Ro02_G02407 68 HCTDEELC-MCLQRLMSGSPLPR-NVIDDVNPYQYMPSNLP-----P--GSFWYLIRSNE-------SKDTNLGYWRTKEEACKIFS-NSILTGWRAT 148 779**9.66******99.99**********9.....2..34555554443.......345789**********.99**** PP NAM 106 LvfykgrapkgektdWvmheyrl 128 L fy+g+ap+ +kt+Wv++ey + Ro02_G02407 149 LEFYEGQAPHERKTNWVIQEYWI 171 *******************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MNGLRISANE EAPRRGMKFI IIHTHLGFMI IQPWPCLNTI QLLNPFPSFG IGCHCPQSAV 60 MLADIGLHCT DEELCMCLQR LMSGSPLPRN VIDDVNPYQY MPSNLPPGSF WYLIRSNESK 120 DTNLGYWRTK EEACKIFSNS ILTGWRATLE FYEGQAPHER KTNWVIQEYW ITQKKVSENS 180 KKKDASLLCR VQSVGGEPKS NCKNLEKMVA SDSASHSTQP VVPLADNRTG HASTSKPQVD 240 ILVIKDNETG TLTVTERLPD HHVEIMPEIE IDFLSSDDYI ELLDLDKPAS FSSSSDSSCL 300 TMSSDECFDS LALLEELEPK IQQDQVNKNA GCKFSISASQ RPDELVMYAA ASSSGSLTKS 360 PSEERVKSHS SVPSLAVCVK IKEKTTKKLS RNQKTSEGCS NSRTMPLPEG EKKANVARAK 420 KIKKKYFCFM PWETR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MNGLRISANE EAPRRGMKFI IIHTHLGFMI IQPWPCLNTI QLLNPFPSFG IGCHCPQSAV  60
MLADIGLHCT DEELCMCLQR LMSGSPLPRN VIDDVNPYQY MPSNLPPGSF WYLIRSNESK  120
DTNLGYWRTK EEACKIFSNS ILTGWRATLE FYEGQAPHER KTNWVIQEYW ITQKKVSENS  180
KKKDASLLCR VQSVGGEPKS NCKNLEKMVA SDSASHSTQP VVPLADNRTG HASTSKPQVD  240
ILVIKDNETG TLTVTERLPD HHVEIMPEIE IDFLSSDDYI ELLDLDKPAS FSSSSDSSCL  300
TMSSDECFDS LALLEELEPK IQQDQVNKNA GCKFSISASQ RPDELVMYAA ASSSGSLTKS  360
PSEERVKSHS SVPSLAVCVK IKEKTTKKLS RNQKTSEGCS NSRTMPLPEG EKKANVARAK  420
KIKKKYFCFM PWETR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	4e-16	NAC family protein