PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02404
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family BES1
Protein Properties Length: 315aa    MW: 34431.4 Da    PI: 9.706
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02404genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222044.5e-63111472141
       DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 
                  + +rkp+w+ErEnn+rRERrRRaiaaki+aGLRaqG ++lpk++DnneVlkALc eAGw+ve+DGttyrkg+kp+  +++ g+s++++p ssl++s+ 
  Ro02_G02404  11 TVRRKPSWRERENNRRRERRRRAIAAKIFAGLRAQGSFNLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGFKPP-PTDTPGASTKITPYSSLNQSPL 107
                  568************************************************************************.99******************** PP

       DUF822 100 ssalaspvesysaspksssfpspssldsislasaasllpvls 141
                  ss+++sp++sy+asp+sssfpsps+   ++++  ++l+p l+
  Ro02_G02404 108 SSSFPSPIPSYQASPSSSSFPSPSRCFDATNS--SNLFPNLR 147
                  ************************96555444..44444443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MTSDGATSAS TVRRKPSWRE RENNRRRERR RRAIAAKIFA GLRAQGSFNL PKHCDNNEVL  60
KALCVEAGWT VEEDGTTYRK GFKPPPTDTP GASTKITPYS SLNQSPLSSS FPSPIPSYQA  120
SPSSSSFPSP SRCFDATNSS NLFPNLRSTI PSSLPPLRIS NSAPVTPPLS SPNSRNCQPI  180
PNWDSIAKQS MASFNYPFYA VSAPASPTRH QVQLHTPPTI FECDESDSST IESGQWFNFQ  240
KFATSLSARP TSPTFNLVKP VPAQQNLPPN GMAEMGRGSE FDFLGGQVKP WVGERIHEVG  300
LDDLELTLGN GKARS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11332RRKPSWRERENNRRRERRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.31e-115BES1 family protein