PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02331

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 477aa MW: 51949.9 Da PI: 8.5709

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	351	389	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++++L++l+ + +K + a++L +A+ YIk Lq Ro02_G02331 351 RKEKLGDRIATLQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 389 7788899*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MYKIQLLKEK GTILSLQMES ANLHHQHHQL QENLSHLGSS SSSSSSLATA PSYYGVGIKD 60 AWTQPTTTAT TNLSNPSNSS FNSNSSINMV PDLGFHCWPP SSNLNRAGTS SSNIKEELSS 120 SSSDSTFPKF TQMLNSPSTT SINLDDDEYH FTSATSLGLI KHEQKEMMMN DLSEKLLLKT 180 LSSSGINHQI SSSGDHHQFY SSNNNHVQNF TQLMPGRSGG QSGHYFSQIY PSINISNLNQ 240 QQSSSSSAIS NCSSLDMNLQ AMDLLASSRF SFHEPSRHSF GLQQMHRSTT THHDRHSLLS 300 CGANSKISSF ENEITEVKRP GSLIEPKATQ AAAPKKSRLE SRTPCPPLKV RKEKLGDRIA 360 TLQQLVAPFG KTDTASVLME AIGYIKFLQN QVETLSVPYM KSSRNHKSSK AMLQGGVMEI 420 NGSNGDHERK RDLRSRGLCL VPLSCMSYVT AGTDVAAASA GTGSVNWPAP NYGHGGT

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MYKIQLLKEK GTILSLQMES ANLHHQHHQL QENLSHLGSS SSSSSSLATA PSYYGVGIKD  60
AWTQPTTTAT TNLSNPSNSS FNSNSSINMV PDLGFHCWPP SSNLNRAGTS SSNIKEELSS  120
SSSDSTFPKF TQMLNSPSTT SINLDDDEYH FTSATSLGLI KHEQKEMMMN DLSEKLLLKT  180
LSSSGINHQI SSSGDHHQFY SSNNNHVQNF TQLMPGRSGG QSGHYFSQIY PSINISNLNQ  240
QQSSSSSAIS NCSSLDMNLQ AMDLLASSRF SFHEPSRHSF GLQQMHRSTT THHDRHSLLS  300
CGANSKISSF ENEITEVKRP GSLIEPKATQ AAAPKKSRLE SRTPCPPLKV RKEKLGDRIA  360
TLQQLVAPFG KTDTASVLME AIGYIKFLQN QVETLSVPYM KSSRNHKSSK AMLQGGVMEI  420
NGSNGDHERK RDLRSRGLCL VPLSCMSYVT AGTDVAAASA GTGSVNWPAP NYGHGGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-51	bHLH family protein