PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02278
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family BBR-BPC
Protein Properties Length: 401aa    MW: 44949.9 Da    PI: 10.2706
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02278genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind386.15.2e-118604011301
    GAGA_bind   1 mdddgsre..rnkg..yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 
                  mdd g+re  r k+  +++        ++ + ++   +q+m+++aerda+i+ernla+sekk a+aerdmaflqrd+a+aern+a++erdn++++l++
  Ro02_G02278  60 MDDGGHREngRLKAeqQHKaaqgqwlmQH-QPHQPYMKQIMAIMAERDAAIQERNLAFSEKKTALAERDMAFLQRDAAIAERNNAIMERDNAIATLQY 156
                  77777766566655323336655555422.22334557************************************************************ PP

    GAGA_bind  87 vensla.....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                  ++ns+      s++p+g+q+++g k++++ qq +++ p++++ ++ +re++++++lp+   +++a   +k++   ++k+pk++k+  ++kk++ks +k
  Ro02_G02278 157 RDNSSLtsgnvSSCPPGCQISRGIKHMHNPQQhVHHlPHMNEASYSTREMHTNDSLPLPPDTSTA---PKSR---QTKRPKQPKTMPPNKKTSKSPRK 248
                  **9988899999********************55559********************76544333...3333...44566666666666666677777 PP

    GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246
                  vk+es+  +                             sk+++k++dl+ln+v++D+st+P+PvCsCtG++rqCYkWGnGGWqS+CCttt+S+yPLP+
  Ro02_G02278 249 VKRESEGLNkmtfdrlhewkggqeicggaddlnkqlvvSKSDWKCQDLGLNQVAYDDSTMPAPVCSCTGVMRQCYKWGNGGWQSSCCTTTMSIYPLPA 346
                  77777663347788899********************************************************************************* PP

    GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  ++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
  Ro02_G02278 347 VPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 401
                  ******************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    
MSRQRQVKPH LHTTTSLHLH LSTVMRGAQK VENSSSSTRP FPFHGFSSSS QIKVSLNSLM  60
DDGGHRENGR LKAEQQHKAA QGQWLMQHQP HQPYMKQIMA IMAERDAAIQ ERNLAFSEKK  120
TALAERDMAF LQRDAAIAER NNAIMERDNA IATLQYRDNS SLTSGNVSSC PPGCQISRGI  180
KHMHNPQQHV HHLPHMNEAS YSTREMHTND SLPLPPDTST APKSRQTKRP KQPKTMPPNK  240
KTSKSPRKVK RESEGLNKMT FDRLHEWKGG QEICGGADDL NKQLVVSKSD WKCQDLGLNQ  300
VAYDDSTMPA PVCSCTGVMR QCYKWGNGGW QSSCCTTTMS IYPLPAVPNK RHARVGGRKM  360
SGSAFNKLLS RLAAEGHDLS NPVDLKDNWA KHGTNRYITI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-155BBR-BPC family protein