PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G01632

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CPP

Protein Properties

Length: 993aa MW: 109258 Da PI: 7.519

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G01632	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.8	5e-14	526	564	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC+k+kClk+YC+Cf+ag +C+ +C C +C+N+ e Ro02_G01632 526 CKRCNCRKTKCLKLYCDCFSAGIYCDTTCACLECFNRPE 564 79**********************************876 PP
2	TCR	48.7	1.5e-15	603	641	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+C+N Ro02_G01632 603 RHKRGCNCKKSMCLKKYCECYQANVGCSNGCRCEGCQNV 641 589***********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence
MDSPDITKTK ATASPSSDSP PVQESPVFSY INSLSPIKIV NATHVAQGFP GLSSPPLVFT 60 SPRINPYSET SFLKRRPQHS ELSSAGIPKT QDEGKNFVDP EKPLTKLQLG LITDTRDCKT 120 KNFVETHPCS SSGLVDKYLA DSTEVDFVNS GQSVNPCLEH SNNVPESSRS GLIKSKELSL 180 TFGNKNDSAT DSTTEAQAPF MISEQAQEYI QGKQTFSAKP TGSKKQRDDE LPFNECKHLE 240 SGLSVDNAFR REYHRDFHDQ GLEGEHQDNY DYSHQSLAGA LQIVRVYEDE NAGSISNRLV 300 ENTVMHAPKI NWARNNQCGM QRRCLQFEEA SPCTSGKGDD SLSLSEKVSN SEPPTGTVES 360 EMVESSYLEL SAASTKRQMA ASLPPRSTGK SRLTVSKPSG IGLHLNSIVN AASVVRGATS 420 IKLADRMGVH PMNSASVNVR RCPNSLNVVE KDSAGAVDWR NETEASVAAS SATTQSPHSV 480 EFEHHGPIHE RRISDSYSAD SYEECNQSSP KMKRKRALRN IDSDGCKRCN CRKTKCLKLY 540 CDCFSAGIYC DTTCACLECF NRPEYEDTVL EIRQKIESRN PLAFAPKIVE REDENQFTPA 600 SARHKRGCNC KKSMCLKKYC ECYQANVGCS NGCRCEGCQN VYGKRGEFVD MDPGVAEEAI 660 PNNADPIRES TFDEKLQMVA TRKDSNDSLN LTPLTPSLQC FDDTHNVSKS RVLPARCRLS 720 PQSDLTVISH YKKSTRSPQR NSENSDNLMD TSNGVLDVGS YDWRADYENI GILDISSPRC 780 DAVPPTCHTP LSGPGSIAIA SSASSTTRDL TNVSQVHLRP GSHCLLSGSS LHWHSSPVTP 840 MPRLGGMKSF QDFDSEKGHH NVLQDDTPEI LKDTSIPIKS VKVSSPNKKR VSPPHSHDLG 900 ASSSGGLRSG RKFILKAVPS FPPLTPCIGS KAGSTIQNMI YSKGSLWSLI VVVVLRRYFQ 960 ISVCGLNVVR FEYGDIFRYL KLNRGMMIRE MTI

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence

MDSPDITKTK ATASPSSDSP PVQESPVFSY INSLSPIKIV NATHVAQGFP GLSSPPLVFT  60
SPRINPYSET SFLKRRPQHS ELSSAGIPKT QDEGKNFVDP EKPLTKLQLG LITDTRDCKT  120
KNFVETHPCS SSGLVDKYLA DSTEVDFVNS GQSVNPCLEH SNNVPESSRS GLIKSKELSL  180
TFGNKNDSAT DSTTEAQAPF MISEQAQEYI QGKQTFSAKP TGSKKQRDDE LPFNECKHLE  240
SGLSVDNAFR REYHRDFHDQ GLEGEHQDNY DYSHQSLAGA LQIVRVYEDE NAGSISNRLV  300
ENTVMHAPKI NWARNNQCGM QRRCLQFEEA SPCTSGKGDD SLSLSEKVSN SEPPTGTVES  360
EMVESSYLEL SAASTKRQMA ASLPPRSTGK SRLTVSKPSG IGLHLNSIVN AASVVRGATS  420
IKLADRMGVH PMNSASVNVR RCPNSLNVVE KDSAGAVDWR NETEASVAAS SATTQSPHSV  480
EFEHHGPIHE RRISDSYSAD SYEECNQSSP KMKRKRALRN IDSDGCKRCN CRKTKCLKLY  540
CDCFSAGIYC DTTCACLECF NRPEYEDTVL EIRQKIESRN PLAFAPKIVE REDENQFTPA  600
SARHKRGCNC KKSMCLKKYC ECYQANVGCS NGCRCEGCQN VYGKRGEFVD MDPGVAEEAI  660
PNNADPIRES TFDEKLQMVA TRKDSNDSLN LTPLTPSLQC FDDTHNVSKS RVLPARCRLS  720
PQSDLTVISH YKKSTRSPQR NSENSDNLMD TSNGVLDVGS YDWRADYENI GILDISSPRC  780
DAVPPTCHTP LSGPGSIAIA SSASSTTRDL TNVSQVHLRP GSHCLLSGSS LHWHSSPVTP  840
MPRLGGMKSF QDFDSEKGHH NVLQDDTPEI LKDTSIPIKS VKVSSPNKKR VSPPHSHDLG  900
ASSSGGLRSG RKFILKAVPS FPPLTPCIGS KAGSTIQNMI YSKGSLWSLI VVVVLRRYFQ  960
ISVCGLNVVR FEYGDIFRYL KLNRGMMIRE MTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-58	CPP family protein